From 7efcb4da3e43b3f0ef43c9abd71e853f1aefa79a Mon Sep 17 00:00:00 2001
From: Martin Demko <325073@mail.muni.cz>
Date: Thu, 17 Apr 2025 12:40:49 +0200
Subject: [PATCH 1/2] Adds proper SINGULARITY_CACHEDIR variables

update for singularity resolver.
---
 templates/galaxy/config/tpv_rules_meta.yml.j2 | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/templates/galaxy/config/tpv_rules_meta.yml.j2 b/templates/galaxy/config/tpv_rules_meta.yml.j2
index 7f60a51..d45ced7 100644
--- a/templates/galaxy/config/tpv_rules_meta.yml.j2
+++ b/templates/galaxy/config/tpv_rules_meta.yml.j2
@@ -160,7 +160,7 @@ destinations:
       # Ensuring a consistent collation environment is good for reproducibility.
       LC_ALL: C
       # The cache directory holds the docker containers that get converted
-      SINGULARITY_CACHEDIR: "/cvmfs/singularity.galaxyproject.org/all/"
+      SINGULARITY_CACHEDIR: "{{ galaxy_mutable_data_dir }}/singularity/cache"
       # Singularity uses a temporary directory to build the squashfs filesystem
       SINGULARITY_TMPDIR: "{{ galaxy_mutable_data_dir }}/tmp"
     scheduling:
@@ -202,7 +202,8 @@ destinations:
       TMPDIR: $SCRATCHDIR
       TMP: $SCRATCHDIR
       TEMP: $SCRATCHDIR
-      SINGULARITY_CACHEDIR: "/cvmfs/singularity.galaxyproject.org/all/"
+      APPTAINER_CACHEDIR: "/storage/{{ pulsar.nfs_home }}/home/{{ pulsar.user_name }}/.singularity/cache/"
+      SINGULARITY_CACHEDIR: "/storage/{{ pulsar.nfs_home }}/home/{{ pulsar.user_name }}/.singularity/cache/"
       SINGULARITY_TMPDIR: $SCRATCHDIR
       XDG_CACHE_HOME: $SCRATCHDIR
     scheduling:

From 5ebbaa121a197911398faedb6f3e38794f5a5ed7 Mon Sep 17 00:00:00 2001
From: Martin Demko <325073@mail.muni.cz>
Date: Thu, 17 Apr 2025 12:46:49 +0200
Subject: [PATCH 2/2] adds cached_explicit_singularity

---
 group_vars/galaxyservers.yml | 15 ++++++++-------
 1 file changed, 8 insertions(+), 7 deletions(-)

diff --git a/group_vars/galaxyservers.yml b/group_vars/galaxyservers.yml
index e880cdc..9464a14 100644
--- a/group_vars/galaxyservers.yml
+++ b/group_vars/galaxyservers.yml
@@ -153,14 +153,15 @@ galaxy_config:
     - /cvmfs/data.galaxyproject.org/managed/location/tool_data_table_conf.xml
     # Tool Dependencies
     container_resolvers:
+    -   type: cached_explicit_singularity
+        cache_directory: "/storage/{{ pulsar.nfs_home }}/home/{{ pulsar.user_name }}/.singularity/cache/"
     -   type: explicit_singularity
-    -   cache_directory: /cvmfs/singularity.galaxyproject.org/all/
-        type: cached_mulled_singularity
-    -   auto_install: true
-        type: mulled_singularity
-    -   auto_install: false
-        type: build_mulled_singularity
-#        cache_directory: /cvmfs/singularity.galaxyproject.org/all/
+    -   type: cached_mulled_singularity
+        cache_directory: /cvmfs/singularity.galaxyproject.org/all/
+    -   type: mulled_singularity
+        auto_install: true
+    -   type: build_mulled_singularity
+        auto_install: false
         cache_directory: "{{ galaxy_mutable_data_dir }}/singularity/mulled"
     # Data Library Directories
     library_import_dir: "{{ csnt_library_import_dir }}"