👋 Hi, I’m @Michael-shannon
👀 I’m interested broadly in computational bio-image analysis.
🌱 Currently making a single particle tracking pipeline for data acquired in neurons from embryonic stem cells
📫 How to reach me: you can email me at [email protected] or click the contact button above.
✨ 2025 ✨
- sptNano: a pipeline to extract features from single particle tracks, classify them and compare with known species.
- karyosight: an image classification pipeline to predict the ploidy status of lung organoids for application to cancer diagnostics.
✨ 2024 ✨
- CellPLATO
"cell PLasticity Analysis TOol" : an unsupervised approach to classify cell behaviours from timelapse microscopy
- Particle Image Velocimetry (PIV) for batch analysis of cytoskeletal flow
I adapted this from Ivan Rey-Suarez and Arpita Upadhyaya (full paper link in repo description)
- AWS adapted localization microscopy multi-blinking correction software (DDC) from Christopher H. Bohrer
I use it currently for STORM data correction, to count molecules in protein clusters/organizing centres, adapted to work on AWS cloud for large datasets
💬 Ask me about anything -> I am happy to answer your questions & help you out; 📫 How to reach me: check the banners at the top of this page!