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Merge pull request #123 from Roman-Supernova-PIT/122-photometry_test_data
Modify phrosty tests (and a little bit of the code) to use the photometry_test_data images
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‎changes/123.phrosty.rst‎

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Modify tests (and a bit of code) to use photometry_test_data

‎docs/api.rst‎

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===========
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phrosty API
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===========
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.. contents::
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phrosty.imagesubtraction
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------------------------
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.. automodule:: phrosty.imagesubtraction
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:members:
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phrosty.photometry
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------------------
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.. automodule:: phrosty.photometry
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:members:
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phrosty.pipeline
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----------------
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.. automodule:: phrosty.pipeline
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:members:
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phrosty.utils
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-------------
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.. automodule:: phrosty.utils
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:members:

‎docs/conf.py‎

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import datetime
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import importlib
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import sys
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import pathlib
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import os
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import tomli
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from sphinx.ext.autodoc import AttributeDocumenter
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# -- Code import for autodoc -------------------------------------------------
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# Make sure the phrosty module can be found so we can document the API
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sys.path.insert( 0, str( pathlib.Path( '..' ).resolve() ) )
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autodoc_mock_imports = [ 'astropy', 'photutils', 'cupy', 'nvtx', 'matplotlib', 'galsim',
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'sfft', 'snpit_utils', 'snappl' ]
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# -- Project information -----------------------------------------------------
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# to populate metadata from the pyproject.toml file so that changes are picked

‎docs/development.rst‎

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.. highlight:: shell
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===========
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Development
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===========
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If you're one of the phrosty developers, or are otherwise interested in contributing, here is some useful information.
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Running Tests
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-------------
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Running all of the tests requires an NVIDIA GPU with enough memory. We are able to run them on 40GB NVIDIA GPUs, a GPU with only 12GB is not enough. (TODO: figure out the actual cutoff.)
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To run the tests, make sure to run the SNPIT container as described in :ref:`running-snpit-container`. Inside the container, cd into the `/phrosty/phrosty/tests` directory and run::
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SNPIT_CONFIG=phrosty_test_config.yaml pytest -v
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‎docs/index.rst‎

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installation.rst
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usage.rst
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development.rst
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changes.rst
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api.rst
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Indices and tables

‎docs/installation.rst‎

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Installation
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============
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Prerequisites
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-------------
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Currently, phrosty is designed inside a container built from the the Roman Supernova PIT environment defined at https://github.com/Roman-Supernova-PIT/environment .
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You can pull the necessary container from one of the following two sources:
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* ``registry.nersc.gov/m4385/rknop/roman-snpit-env:cuda-dev``
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* ``docker.io/rknop/roman-snpit-env:cuda-dev``
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Because phrosty (and other libraries it depends on, such as snappl) is under heavy development, it's possible that the latest container will not work properly with phrosty at any given moment.
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.. _running-snpit-container:
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Running the SNPIT container
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---------------------------
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TODO.
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725

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Stable release
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--------------
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(NOTE: this is not currently supported, we don't have up-to-date pip releases.)
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To install phrosty, run this command in your terminal:
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.. code-block:: console

‎examples/perlmutter/20172782_2sci1templ.sh‎

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--mount type=bind,source=$PWD/dia_out_dir,target=/dia_out_dir \
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--mount type=bind,source=$PWD/lc_out_dir,target=/lc_out_dir \
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--mount type=bind,source=$SCRATCH/phrosty_temp,target=/phrosty_temp \
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--mount type=bind,source=/dvs_ro/cfs/cdirs/lsst/shared/external/roman-desc-sims/Roman_data,target=/sims_dir \
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--mount type=bind,source=/dvs_ro/cfs/cdirs/lsst/www/DESC_TD_PUBLIC/Roman+DESC/PQ+HDF5_ROMAN+LSST_LARGE,target=/snana_pq_dir \
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--mount type=bind,source=/dvs_ro/cfs/cdirs/lsst/www/DESC_TD_PUBLIC/Roman+DESC/ROMAN+LSST_LARGE_SNIa-normal,target=/snid_lc_dir \
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--mount type=bind,source=/dvs_ro/cfs/cdirs/lsst/shared/external/roman-desc-sims/Roman_data,target=/ou2024 \
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--mount type=bind,source=/dvs_ro/cfs/cdirs/lsst/www/DESC_TD_PUBLIC/Roman+DESC/PQ+HDF5_ROMAN+LSST_LARGE,target=/ou2024_snana \
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--mount type=bind,source=/dvs_ro/cfs/cdirs/lsst/www/DESC_TD_PUBLIC/Roman+DESC/ROMAN+LSST_LARGE_SNIa-normal,target=/ou2024_snana_lc_dir \
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--mount type=bind,source=/dvs_ro/cfs/cdirs/lsst/www/DESC_TD_PUBLIC/Roman+DESC/sims_sed_library,target=/ou2024_sims_sed_library \
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--env LD_LIBRARY_PATH=/usr/lib64:/usr/lib/x86_64-linux-gnu:/usr/local/cuda/lib64:/usr/local/cuda/lib64/stubs \
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--env PYTHONPATH=/roman_imsim:/phrosty:/sfft \
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--env OPENBLAS_NUM_THREADS=1 \
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--env MKL_NUM_THREADS=1 \
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--env NUMEXPR_NUM_THREADS=1 \
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--env OMP_NUM_THREADS=1 \
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--env VECLIB_MAXIMUM_THREADS=1 \
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--env SIMS_DIR=/sims_dir \
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--env SNANA_PQ_DIR=/snana_pq_dir \
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--env TERM=xterm \
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-w /home \
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-it \
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registry.nersc.gov/m4385/rknop/roman-snpit-env:cuda-dev \
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python phrosty/phrosty/pipeline.py \
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-c phrosty_config.yaml \
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-c phrosty/examples/perlmutter/phrosty_config.yaml \
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--oid 20172782 \
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-r 7.551093401915147 \
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-d -44.80718106491529 \
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-b R062 \
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-t 20172782_instances_templates_1.csv \
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-s 20172782_instances_science_two_images.csv \
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-t phrosty/examples/perlmutter/20172782_instances_templates_1.csv \
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-s phrosty/examples/perlmutter/20172782_instances_science_2.csv \
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-p 15 \
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‎examples/perlmutter/20172782_instances_science.csv‎

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path pointing sca mjd band
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‎examples/perlmutter/20172782_instances_science_2.csv‎

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‎examples/perlmutter/20172782_instances_science_two_images.csv‎

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