v.0.0.6

Author: ekatrukha

Correlescence_v_0.0.5.jar renamed to Correlescence_v_0.0.6.jar

@@ -5,7 +5,7 @@
   <property name="src" location="src" />
   <property name="build" location="bin" />
   <property name="dist"  location="dist" />
-  <property name="version" value="v_0.0.5" /> 
+  <property name="version" value="v_0.0.6" /> 
   <property name="pluginsDir"  location="$basedir/../../IJ/plugins/" />
   <property name="user.name" value="Yevhen Katrukha" />
 	<tstamp>

build.xml

@@ -1,5 +1,5 @@
 package Correlescence;
 
 public interface ConstantsCorrelescence {
-	public static final String sVersion="0.0.5";
+	public static final String sVersion="0.0.6";
 }

src/Correlescence/ConstantsCorrelescence.java

@@ -31,7 +31,7 @@ public class Temporal_ICS implements PlugIn {
 	/** correlation normalization method 
 	 * 0 = overlap area
 	 * 1 = full area **/
-	int nNormMethod=0;
+	int nNormMethod=1;
 
 	/** object calculating correlation **/
 	imCC1D x1D = new imCC1D();
@@ -526,7 +526,7 @@ public FloatProcessor findMax(ImageStack imp_in, double tolerance)
 
 				arrlength = maxpos.length;
 
-				if(arrlength ==0)
+				if(arrlength == 0)
 				{
 					maxInd = 0;					
 				}
@@ -557,6 +557,23 @@ public FloatProcessor findMax(ImageStack imp_in, double tolerance)
 				{
 					finVal = 1./finVal;
 				}
+				
+				//special case
+				if(maxInd == 0)
+				{
+					//frequency
+					if(nOutput == 0)
+					{
+						finVal = 0.0;
+					}
+					//period
+					else
+					{
+						finVal = Double.POSITIVE_INFINITY;
+					}
+				}
+				
+			
 				//store result
 				ipFin.putPixelValue(k, j, finVal);
 

src/Correlescence/Temporal_ICS.java

@@ -1,13 +1,13 @@
-Plugins>Correlescence v0.0.5, "2D cross-correlation", Correlescence.Correlescence2D
-Plugins>Correlescence v0.0.5, "2D STICS (space, time)", Correlescence.Corr2DSTICS
-Plugins>Correlescence v0.0.5, "1D STICS (space, time)", Correlescence.Corr1DSTICS
-Plugins>Correlescence v0.0.5, "Temporal ICS", Correlescence.Temporal_ICS
-Plugins>Correlescence v0.0.5, "FRFT",  Correlescence.FRFT_test
-Plugins>Correlescence v0.0.5>_FFT tools, "2D FFT basics", Correlescence.FFTtoolsUI("2DFFT")
-Plugins>Correlescence v0.0.5>_FFT tools, "Periodic-plus-smooth decomposition", Correlescence.FFTtoolsUI("periodicsmooth")
-Plugins>Correlescence v0.0.5>_Development, "Anglelets sector", Correlescence.AngleletsFront("sector")
-Plugins>Correlescence v0.0.5>_Development, "Anglelets decompose", Correlescence.AngleletsFront("decompose")
-Plugins>Correlescence v0.0.5>_Development, "Split kymograph", Correlescence.KymoSplit
-Plugins>Correlescence v0.0.5>_Development, "Split movie", Correlescence.MovieSplit
-Plugins>Correlescence v0.0.5>_Development, "Generate artificial kymograph", Correlescence.KymographGenerator
-Plugins>Correlescence v0.0.5>_Development, "Particle number from kymograph", Correlescence.KymoPatNumberFCS
+Plugins>Correlescence v0.0.6, "2D cross-correlation", Correlescence.Correlescence2D
+Plugins>Correlescence v0.0.6, "2D STICS (space, time)", Correlescence.Corr2DSTICS
+Plugins>Correlescence v0.0.6, "1D STICS (space, time)", Correlescence.Corr1DSTICS
+Plugins>Correlescence v0.0.6, "Temporal ICS", Correlescence.Temporal_ICS
+Plugins>Correlescence v0.0.6, "FRFT",  Correlescence.FRFT_test
+Plugins>Correlescence v0.0.6>_FFT tools, "2D FFT basics", Correlescence.FFTtoolsUI("2DFFT")
+Plugins>Correlescence v0.0.6>_FFT tools, "Periodic-plus-smooth decomposition", Correlescence.FFTtoolsUI("periodicsmooth")
+Plugins>Correlescence v0.0.6>_Development, "Anglelets sector", Correlescence.AngleletsFront("sector")
+Plugins>Correlescence v0.0.6>_Development, "Anglelets decompose", Correlescence.AngleletsFront("decompose")
+Plugins>Correlescence v0.0.6>_Development, "Split kymograph", Correlescence.KymoSplit
+Plugins>Correlescence v0.0.6>_Development, "Split movie", Correlescence.MovieSplit
+Plugins>Correlescence v0.0.6>_Development, "Generate artificial kymograph", Correlescence.KymographGenerator
+Plugins>Correlescence v0.0.6>_Development, "Particle number from kymograph", Correlescence.KymoPatNumberFCS