diff --git a/jsx/Panel.js b/jsx/Panel.js index 7c0fd84cce6..41952ad015f 100644 --- a/jsx/Panel.js +++ b/jsx/Panel.js @@ -91,6 +91,14 @@ const Panel = (props) => { {props.views && props.views[activeView]['title'] ? props.views[activeView]['title'] : props.title} + {props.views && props.views[activeView]['subtitle'] + && + {!props.views[activeView]['subtitle'].endsWith('-1') + ? ' | ' + `${props.views[activeView]['subtitle']}` + : ' | ' + 'Loading...' + } + + } {panelViews} {props.collapsing diff --git a/modules/statistics/css/WidgetIndex.css b/modules/statistics/css/WidgetIndex.css index 00a2306accc..d7b4fda73dd 100644 --- a/modules/statistics/css/WidgetIndex.css +++ b/modules/statistics/css/WidgetIndex.css @@ -1,3 +1,165 @@ .c3-tooltip-container { top: 0px !important; +} + +.filter-grid { + display: grid; + grid-template-columns: 1fr 1fr; + gap: 20px; + padding: 20px; + width: 100%; +} + +.c3-chart-line.c3-target.c3-target-Total{ + display: none !important; +} + +/* ===== Chart Header (Title + Dropdown) ===== */ +.chart-header { + display: flex; + flex-direction: column; + align-items: center; /* center both title and dropdown */ + gap: 10px; +} + +.chart-title { + font-size: 1.5rem; + font-weight: 700; +} + +.chart-dropdown-wrapper { + width: 100%; + display: flex; + justify-content: center; +} + +.chart-dropdown { + padding: 5px 10px; + font-size: 0.9rem; + border-radius: 5px; + border: 1px solid #ccc; + min-width: 100px; + max-width: 200px; +} + + +.chart-visual-wrapper { + display: flex; + justify-content: center; + align-items: center; + width: 100%; +} + +.chart-visual-wrapper svg { + display: block; + margin: 0 auto; + max-width: 100%; +} + +/* Mobile view: stack title and dropdown */ +@media (max-width: 600px) { + .chart-header { + flex-direction: column; + align-items: flex-start; + } + + .chart-title { + padding: 10px; + } + + .chart-dropdown { + width: 100%; + margin-top: 8px; + } +} + +/* ===== Grid Wrapper for Chart Cards + Filters ===== */ + +.charts-grid { + display: grid; + grid-template-columns: repeat(2, 1fr); + gap: 20px; + padding: 20px; + margin: 0 auto; + width: 100%; + box-sizing: border-box; +} + +#charts-one-column { + grid-template-columns: 1fr; +} + +/* Chart Card */ +.chart-card { + background-color: #ffffff; + border-radius: 20px; + padding: 10px; + box-shadow: 2px 2px 5px rgba(0, 0, 0, 0.25); + transition: all 0.3s ease; +} + +.chart-card:hover { + transform: translateY(-10px); + background-color: #f9fdff; + box-shadow: 0 12px 24px rgba(0, 0, 0, 0.25); + border: 1px solid #acacac; +} + +@media (max-width: 768px) { + + body, + html { + width: 100%; + overflow-x: hidden; + } + + .charts-grid, + .chart-card, + .charts-grid>[class*="col-"] { + max-width: 100% !important; + width: 100% !important; + margin: 0 !important; + padding: 0 !important; + box-sizing: border-box; + } + + .chart-card svg, + .chart-card .c3 { + max-width: 100%; + width: 100%; + box-sizing: border-box; + overflow-x: hidden; + } + + .chart-card .c3 { + display: flex; + justify-content: center; + } + + .charts-grid { + grid-template-columns: 1fr; + padding-left: 0 !important; + padding-right: 0 !important; + margin-left: 0 !important; + margin-right: 0 !important; + width: 100% !important; + box-sizing: border-box; + } + + .charts-grid>[class*="col-"] { + width: 100% !important; + margin: 0 auto !important; + padding-left: 0 !important; + padding-right: 0 !important; + box-sizing: border-box; + } + + .site-breakdown-card { + width: 100% !important; + box-sizing: border-box; + } + + .filter-grid { + grid-template-columns: 1fr; + } } \ No newline at end of file diff --git a/modules/statistics/css/recruitment.css b/modules/statistics/css/recruitment.css index 0b85345a883..1aaccf5781d 100644 --- a/modules/statistics/css/recruitment.css +++ b/modules/statistics/css/recruitment.css @@ -11,10 +11,6 @@ background-color: #2FA4E7; } -.c3-chart-line.c3-target.c3-target-Total{ - display: none !important; -} - .study-progression-container { max-height: 415px; overflow-y: auto; @@ -46,197 +42,4 @@ transform: translateY(-10px); background-color: #f9fdff; box-shadow: 0 12px 12px rgba(0, 0, 0, 0.25); -} - -/* ===== Chart Header (Title + Dropdown) ===== */ -.chart-header { - display: flex; - flex-direction: column; - align-items: center; /* center both title and dropdown */ - gap: 10px; -} - -.chart-title { - font-size: 1.5rem; - font-weight: 700; -} - -.chart-dropdown-wrapper { - width: 100%; - display: flex; - justify-content: center; -} - -.chart-dropdown { - padding: 5px 10px; - font-size: 0.9rem; - border-radius: 5px; - border: 1px solid #ccc; - min-width: 100px; - max-width: 200px; -} - - -.chart-visual-wrapper { - display: flex; - justify-content: center; - align-items: center; - width: 100%; -} - -.chart-visual-wrapper svg { - display: block; - margin: 0 auto; - max-width: 100%; -} - -/* Mobile view: stack title and dropdown */ -@media (max-width: 600px) { - .chart-header { - flex-direction: column; - align-items: flex-start; - } - - .chart-title { - padding: 10px; - } - - .chart-dropdown { - width: 100%; - margin-top: 8px; - } -} - -/* ===== Grid Wrapper for Chart Cards + Filters ===== */ - -.site-breakdown-grid { - display: grid; - grid-template-columns: repeat(2, 1fr); - gap: 20px; - padding: 20px; - margin: 0 auto; - width: 100%; - box-sizing: border-box; -} - -#site-breakdown-grid-one-column { - grid-template-columns: 1fr; -} - -/* Chart Card */ -.site-breakdown-card { - background-color: #ffffff; - border-radius: 20px; - padding: 10px; - box-shadow: 2px 2px 5px rgba(0, 0, 0, 0.25); - transition: all 0.3s ease; -} - -.site-breakdown-card:hover { - transform: translateY(-10px); - background-color: #f9fdff; - box-shadow: 0 12px 24px rgba(0, 0, 0, 0.25); - border: 1px solid #acacac; -} - -/* Ensure the form spans full width */ -.site-breakdown-filters { - grid-column: 1 / -1; - display: flex; - flex-wrap: wrap; - justify-content: center; - background-color: #ffffff; - padding: 20px; - border-radius: 20px; - box-shadow: 2px 2px 5px rgba(0, 0, 0, 0.25); - margin-top: 20px; - width: 100%; - gap: 20px; - box-sizing: border-box; - transition: all 0.3s ease; -} - -.site-breakdown-filters:hover { - transform: translateY(-10px); - background-color: #f9fdff; - box-shadow: 0 12px 24px rgba(0, 0, 0, 0.15); - border: 1px solid #d1d1d1; -} - -/* This targets each dropdown/input block inside the filter area */ -.site-breakdown-filters>div { - flex: 1 1 200px; - min-width: 200px; -} - -.filter-grid { - display: grid; - grid-template-columns: 1fr 1fr; - gap: 20px; - padding: 20px; - width: 100%; -} - -@media (max-width: 768px) { - - body, - html { - width: 100%; - overflow-x: hidden; - } - - .site-breakdown-grid, - .site-breakdown-card, - .site-breakdown-grid>[class*="col-"] { - max-width: 100% !important; - width: 100% !important; - margin: 0 !important; - padding: 0 !important; - box-sizing: border-box; - } - - .site-breakdown-card svg, - .site-breakdown-card .c3 { - max-width: 100%; - width: 100%; - box-sizing: border-box; - overflow-x: hidden; - } - - .site-breakdown-card .c3 { - display: flex; - justify-content: center; - } - - .site-breakdown-grid { - grid-template-columns: 1fr; - padding-left: 0 !important; - padding-right: 0 !important; - margin-left: 0 !important; - margin-right: 0 !important; - width: 100% !important; - box-sizing: border-box; - } - - .site-breakdown-grid>[class*="col-"] { - width: 100% !important; - margin: 0 auto !important; - padding-left: 0 !important; - padding-right: 0 !important; - box-sizing: border-box; - } - - .site-breakdown-card { - width: 100% !important; - box-sizing: border-box; - } - - .site-breakdown-filters>div { - flex: 1 1 100%; - min-width: 100%; - } - - .filter-grid { - grid-template-columns: 1fr; - } } \ No newline at end of file diff --git a/modules/statistics/jsx/WidgetIndex.js b/modules/statistics/jsx/WidgetIndex.js index c6d6e1cd754..11c99739bad 100644 --- a/modules/statistics/jsx/WidgetIndex.js +++ b/modules/statistics/jsx/WidgetIndex.js @@ -10,7 +10,7 @@ import {SelectElement} from 'jsx/Form'; import '../css/WidgetIndex.css'; -import {setupCharts} from './widgets/helpers/chartBuilder'; +import {setupCharts, unloadCharts} from './widgets/helpers/chartBuilder'; /** * WidgetIndex - the main window. @@ -28,7 +28,7 @@ const WidgetIndex = (props) => { let {title, chartType, options} = chartDetails[section][chartID]; return (
{/* Chart Title and Dropdown */}
@@ -172,6 +172,20 @@ const WidgetIndex = (props) => { chartDetails, setChartDetails ) => { + // Unload all charts in the section first + unloadCharts(chartDetails, section); + + // Clear cached data from chartDetails to prevent old data from showing + let clearedChartDetails = {...chartDetails}; + Object.keys(chartDetails[section]).forEach((chartID) => { + clearedChartDetails[section][chartID] = { + ...chartDetails[section][chartID], + data: null, + chartObject: null, + }; + }); + setChartDetails(clearedChartDetails); + let formObject = new FormData(); for (const key in formDataObj) { if (formDataObj[key] != '' && formDataObj[key] != ['']) { @@ -179,21 +193,30 @@ const WidgetIndex = (props) => { } } const queryString = '?' + new URLSearchParams(formObject).toString(); - let newChartDetails = {...chartDetails}; + let newChartDetails = {...clearedChartDetails}; + + const chartPromises = []; Object.keys(chartDetails[section]).forEach( (chart) => { - // update filters - let newChart = {...chartDetails[section][chart], filters: queryString}; - setupCharts(false, + // update filters with cleared data + let newChart = { + ...clearedChartDetails[section][chart], + filters: queryString, + }; + const chartPromise = setupCharts(false, {[section]: {[chart]: newChart}}).then( (data) => { // update chart data newChartDetails[section][chart] = data[section][chart]; } ); + chartPromises.push(chartPromise); } ); - setChartDetails(newChartDetails); + + Promise.all(chartPromises).then(() => { + setChartDetails(newChartDetails); + }); }; /** diff --git a/modules/statistics/jsx/widgets/helpers/chartBuilder.js b/modules/statistics/jsx/widgets/helpers/chartBuilder.js index 0821157c0f3..fedf4d0fb1f 100644 --- a/modules/statistics/jsx/widgets/helpers/chartBuilder.js +++ b/modules/statistics/jsx/widgets/helpers/chartBuilder.js @@ -15,42 +15,16 @@ const siteColours = [ // Colours for the recruitment bar chart: breakdown by sex const sexColours = ['#2FA4E7', '#1C70B6']; -/** - * onload - override link click to cancel any fetch for statistical data. - */ -window.onload = () => { - document.body.addEventListener('click', (e) => { - // User clicks on a link.. - if ( - e.target && - e.target.nodeName === 'A' && - e.target.hasAttribute('data-target') === false - ) { - window.stop(); - } else if ( - e.target && - e.target.nodeName === 'A' && - e.target.hasAttribute('data-target') === true - ) { - const myTimeout = setTimeout(() => { - resizeGraphs(); - clearTimeout(myTimeout); - }, 500); - } - }); -}; - let charts = [] -const resizeGraphs = () => { - charts.forEach((chart) => { - if (chart !== undefined) { - elementVisibility(chart.element, (visible) => { - if (visible) { - chart.resize(); - } - }) - } - }) +const resizeGraphs = (chartDetails) => { + Object.keys(chartDetails).forEach((section) => { + Object.keys(chartDetails[section]).forEach((chartID) => { + const chart = chartDetails[section][chartID].chartObject; + if (chart !== undefined && chart !== null) { + chart.resize(); + } + }); + }); }; /** @@ -110,7 +84,7 @@ const createPieChart = (columns, id, targetModal, colours) => { type: 'pie', }, size: { - height: targetModal ? 700 : 350, + height: targetModal ? 500 : 350, width: targetModal ? 700 : 350, }, color: { @@ -123,9 +97,15 @@ const createPieChart = (columns, id, targetModal, colours) => { } } }, + tooltip: { + format: { + value: function (value, ratio) { + return `${value} (${(ratio * 100).toFixed(0)}%)`; + }, + }, + }, }); - charts.push(newChart); - resizeGraphs(); + return newChart; } const createBarChart = (labels, columns, id, targetModal, colours, dataType) => { @@ -147,7 +127,7 @@ const createBarChart = (labels, columns, id, targetModal, colours, dataType) => }, size: { width: targetModal ? 1000 : 700, - height: targetModal ? 700 : 350, + height: targetModal ? 500 : 350, }, axis: { x: { @@ -176,27 +156,34 @@ const createBarChart = (labels, columns, id, targetModal, colours, dataType) => show: false } }); - charts.push(newChart); - resizeGraphs(); + return newChart; } -const createLineChart = (data, columns, id, label, targetModal) => { +const createLineChart = (data, columns, id, label, targetModal, titlePrefix) => { + // Calculate grand total across all data points for percentage calculation + let grandTotal = 0; + if (data && data.datasets) { + for (let i = 0; i < data.datasets.length; i++) { + for (let j = 0; j < data.datasets[i].data.length; j++) { + grandTotal += parseInt(data.datasets[i].data[j]); + } + } + } + let newChart = c3.generate({ size: { - height: targetModal && 1000, + height: targetModal && 500, width: targetModal && 1000 }, bindto: targetModal ? targetModal : id, data: { x: 'x', - xFormat: '%m-%Y', + xFormat: id.includes('bymonth') && '%m-%Y', columns: columns, type: 'area-spline', }, - legend: { - show: targetModal ? true : false, - }, - axis: { + spline: {interpolation: {type: 'monotone'}}, + axis: id.includes('bymonth') && { x: { type: 'timeseries', tick: { @@ -217,7 +204,7 @@ const createLineChart = (data, columns, id, label, targetModal) => { pattern: siteColours, }, tooltip: { - // hide if 0 + // hide if 0 and add percentage calculations based on grand total contents: function (d, defaultTitleFormat, defaultValueFormat, color) { let $$ = this, config = $$.config, @@ -225,30 +212,39 @@ const createLineChart = (data, columns, id, label, targetModal) => { nameFormat = config.tooltip_format_name || function (name) { return name; }, valueFormat = config.tooltip_format_value || defaultValueFormat, text, i, title, value, name, bgcolor; + for (i = 0; i < d.length; i++) { if (d[i] && d[i].value == 0) { continue; } if (! text) { title = titleFormat ? titleFormat(d[i].x) : d[i].x; + // Format title based on chart type or titlePrefix + if (titlePrefix) { + title = `${titlePrefix}: ${title}`; + } else if (id.includes('agedistribution')) { + title = `Age: ${title}`; + } text = "" + (title || title === 0 ? "" : ""); } name = nameFormat(d[i].name); value = valueFormat(d[i].value, d[i].ratio, d[i].id, d[i].index); + + // Calculate percentage based on grand total of entire dataset + let percentage = grandTotal > 0 ? ((d[i].value / grandTotal) * 100).toFixed(1) : 0; + bgcolor = $$.levelColor ? $$.levelColor(d[i].value) : color(d[i].id); text += ""; text += ""; - text += ""; + text += ""; text += ""; } return text + "
" + title + "
" + name + "" + value + "" + value + " (" + percentage + "%)
"; } - } }); - charts.push(newChart); - resizeGraphs(); + return newChart; } const getChartData = async (target, filters) => { @@ -259,6 +255,25 @@ const getChartData = async (target, filters) => { return await fetchData(query); } +/** + * unloadCharts - unload all charts in a section to clear their data + * @param {object} chartDetails + * @param {string} section + */ +const unloadCharts = (chartDetails, section) => { + Object.keys(chartDetails[section]).forEach((chartID) => { + const chart = chartDetails[section][chartID].chartObject; + if (chart && typeof chart.unload === 'function') { + chart.unload(); + } + // Clear the chart container completely + const element = document.getElementById(chartID); + if (element) { + element.innerHTML ='

Loading...

'; + } + }); +}; + /** * setupCharts - fetch data for charts * If data is provided, use that instead of fetching @@ -302,17 +317,20 @@ const setupCharts = async (targetIsModal, chartDetails) => { columns = columns.slice(1, columns.length - 1); } } + let chartObject = null; if (chart.chartType === 'pie') { - createPieChart(columns, `#${chartID}`, targetIsModal && '#dashboardModal', colours); + chartObject = createPieChart(columns, `#${chartID}`, targetIsModal && '#dashboardModal', colours); } else if (chart.chartType === 'bar') { - createBarChart(labels, columns, `#${chartID}`, targetIsModal && '#dashboardModal', colours, chart.dataType); + chartObject = createBarChart(labels, columns, `#${chartID}`, targetIsModal && '#dashboardModal', colours, chart.dataType); } else if (chart.chartType === 'line') { - createLineChart(chartData, columns, `#${chartID}`, chart.label, targetIsModal && '#dashboardModal'); + chartObject = createLineChart(chartData, columns, `#${chartID}`, chart.label, targetIsModal && '#dashboardModal', chart.titlePrefix); } newChartDetails[section][chartID].data = chartData; + newChartDetails[section][chartID].chartObject = chartObject; }); chartPromises.push(chartPromise); + resizeGraphs(newChartDetails); }); }); @@ -370,4 +388,5 @@ export { // following used by WidgetIndex.js, // recruitment.js and studyProgression.js setupCharts, + unloadCharts, }; \ No newline at end of file diff --git a/modules/statistics/jsx/widgets/helpers/queryChartForm.js b/modules/statistics/jsx/widgets/helpers/queryChartForm.js index c17010d00c5..1e37bdc3d6e 100644 --- a/modules/statistics/jsx/widgets/helpers/queryChartForm.js +++ b/modules/statistics/jsx/widgets/helpers/queryChartForm.js @@ -1,6 +1,6 @@ import React, {useEffect, useState} from 'react'; import PropTypes from 'prop-types'; -import {SelectElement, FormElement, ButtonElement} from 'jsx/Form'; +import {SelectElement, FormElement, ButtonElement, DateElement} from 'jsx/Form'; /** @@ -10,50 +10,27 @@ import {SelectElement, FormElement, ButtonElement} from 'jsx/Form'; * @return {JSX.Element} */ const QueryChartForm = (props) => { - const [optionsProjects, setOptionsProjects] = useState({}); - const [optionsCohorts, setOptionsCohorts] = useState({}); - const [optionsSites, setOptionsSites] = useState({}); - const [optionsVisits, setOptionsVisits] = useState({}); - const [optionsStatus, setOptionsStatus] = useState({}); const [formDataObj, setFormDataObj] = useState({}); + const [options, setOptions] = useState({ + projects: {}, + cohorts: {}, + sites: {}, + visits: {}, + participantStatus: {}, + }); - /** - * useEffect - modified to run when props.data updates. - */ + // Load options from props.data when rendered useEffect( () => { const json = props.data; if (json && Object.keys(json).length !== 0) { - let projectOptions = {}; - for (const [key, value] of - Object.entries(json['options']['projects'])) { - projectOptions[key] = value; - } - setOptionsProjects(projectOptions); - let cohortOptions = {}; - for ( - const [key, value] of Object.entries(json['options']['cohorts']) - ) { - cohortOptions[key] = value; - } - setOptionsCohorts(cohortOptions); - let siteOptions = {}; - for (const [key, value] of Object.entries(json['options']['sites'])) { - siteOptions[key] = value; - } - setOptionsSites(siteOptions); - let visitOptions = {}; - for (const [key, value] of Object.entries(json['options']['visits'])) { - visitOptions[key] = value; - } - setOptionsVisits(visitOptions); - let participantStatusOptions = {}; - for (const [key, value] of Object.entries( - json['options']['participantStatus'] - )) { - participantStatusOptions[key] = value; - } - setOptionsStatus(participantStatusOptions); + setOptions({ + projects: json['options']['projects'] || {}, + cohorts: json['options']['cohorts'] || {}, + sites: json['options']['sites'] || {}, + visits: json['options']['visits'] || {}, + participantStatus: json['options']['participantStatus'] || {}, + }); } }, [props.data] @@ -67,22 +44,28 @@ const QueryChartForm = (props) => { */ const setFormData = (formElement, value) => { - // Normalize single selection into array (in case) - const normalizedValue = Array.isArray(value) ? value : [value]; - - setFormDataObj( - (prevState) => { - const newFormData = { - ...prevState, - [formElement]: normalizedValue.length > 0 - ?normalizedValue : undefined, - }; - props.callback(newFormData); - return newFormData; + let normalizedValue = value; + if (!formElement.includes('date')) { + normalizedValue = Array.isArray(value) ? value : [value]; + // Handle clear selection + if (normalizedValue.includes('__clear__')) { + normalizedValue = undefined; } - ); - }; + } + const newFormData = { + ...formDataObj, + [formElement]: normalizedValue, + }; + if ( + (normalizedValue !== undefined + || formDataObj[formElement] !== undefined) + && !(formElement.includes('date') && value < '1900-01-01') + ) { + props.callback(newFormData); + setFormDataObj(newFormData); + } + }; const resetFilters = () => { setFormDataObj({}); @@ -113,16 +96,12 @@ const QueryChartForm = (props) => { { - if (value.includes('__clear__')) { - setFormData(name, []); - } else { - setFormData(name, value); - } + setFormData(name, value); }} style ={{width: '100%', padding: '8px', borderRadius: '5px', @@ -140,16 +119,12 @@ const QueryChartForm = (props) => { { - if (value.includes('__clear__')) { - setFormData(name, []); - } else { - setFormData(name, value); - } + setFormData(name, value); }} style ={{width: '100%', padding: '8px', borderRadius: '5px', @@ -166,16 +141,12 @@ const QueryChartForm = (props) => { display: 'block'}}>Site { - if (value.includes('__clear__')) { - setFormData(name, []); - } else { - setFormData(name, value); - } + setFormData(name, value); }} style ={{width: '100%', padding: '8px', borderRadius: '5px', @@ -193,16 +164,12 @@ const QueryChartForm = (props) => { { - if (value.includes('__clear__')) { - setFormData(name, []); - } else { - setFormData(name, value); - } + setFormData(name, value); }} style ={{width: '100%', padding: '8px', borderRadius: '5px', @@ -221,16 +188,12 @@ const QueryChartForm = (props) => { { - if (value.includes('__clear__')) { - setFormData(name, []); - } else { - setFormData(name, value); - } + setFormData(name, value); }} style ={{width: '100%', padding: '8px', borderRadius: '5px', @@ -238,6 +201,35 @@ const QueryChartForm = (props) => { />
)} + + {/* DateRegistered Section */} +
+ + { + setFormData(name, value); + }} + style={{width: '100%', padding: '8px', + borderRadius: '5px', + border: '1px solid #ccc'}} + label={'Range Start'} + /> + { + setFormData(name, value); + }} + style={{width: '100%', padding: '8px', + borderRadius: '5px', + border: '1px solid #ccc'}} + label={'Range End'} + /> +
{/* Buttons Section */} diff --git a/modules/statistics/jsx/widgets/recruitment.js b/modules/statistics/jsx/widgets/recruitment.js index f3a4b99938b..a514aa76554 100644 --- a/modules/statistics/jsx/widgets/recruitment.js +++ b/modules/statistics/jsx/widgets/recruitment.js @@ -21,7 +21,7 @@ const Recruitment = (props) => { const [chartDetails, setChartDetails] = useState( { - 'siteBreakdown': { + 'generalBreakdown': { 'agerecruitment_pie': { title: 'Total recruitment by Age', filters: '', @@ -30,6 +30,7 @@ const Recruitment = (props) => { label: 'Age (Years)', options: {pie: 'pie', bar: 'bar'}, legend: 'under', + chartObject: null, }, 'ethnicity_pie': { title: 'Ethnicity at Screening', @@ -39,7 +40,10 @@ const Recruitment = (props) => { label: 'Ethnicity', options: {pie: 'pie', bar: 'bar'}, legend: 'under', + chartObject: null, }, + }, + 'siteBreakdown': { 'siterecruitment_pie': { title: 'Total Recruitment per Site', filters: '', @@ -48,6 +52,7 @@ const Recruitment = (props) => { label: 'Participants', legend: '', options: {pie: 'pie', bar: 'bar'}, + chartObject: null, }, 'siterecruitment_bysex': { title: 'Biological sex breakdown by site', @@ -56,6 +61,19 @@ const Recruitment = (props) => { dataType: 'bar', legend: 'under', options: {bar: 'bar', pie: 'pie'}, + chartObject: null, + }, + }, + 'projectBreakdown': { + 'agedistribution_line': { + sizing: 11, + title: 'Candidate Age at Registration', + filters: '', + chartType: 'line', + dataType: 'line', + legend: '', + options: {line: 'line'}, + chartObject: null, }, }, } @@ -65,6 +83,33 @@ const Recruitment = (props) => { return props.showChart(section, chartID, chartDetails, setChartDetails); }; + const showFilters = (section) => { + return <> +
+ +
+ {showFiltersBreakdown && ( +
+ { + await updateFilters(formDataObj, section); + }} + /> +
+ )} + ; + }; + const updateFilters = (formDataObj, section) => { props.updateFilters(formDataObj, section, @@ -72,6 +117,15 @@ const Recruitment = (props) => { setChartDetails); }; + const getTotalProjectsCount = () => { + return Object.keys(json['recruitment'] || {}) + .filter((key) => key !== 'overall').length; + }; + + const getTotalCohortsCount = () => { + return Object.keys(json['recruitmentcohorts'] || {}).length; + }; + useEffect( () => { if (json && Object.keys(json).length !== 0) { @@ -94,47 +148,40 @@ const Recruitment = (props) => { id ='statistics_recruitment' onChangeView ={(index) => { setupCharts(false, chartDetails); + setShowFiltersBreakdown(false); }} views ={[ { content: -
- {progressBarBuilder(json['recruitment']['overall'])} -
, + <> +
+ {progressBarBuilder(json['recruitment']['overall'])} +
+
+ {showFilters('generalBreakdown')} +
+ {Object + .keys(chartDetails['generalBreakdown']) + .map((chartID) => ( + + {showChart('generalBreakdown', chartID)} + + ))} +
+ , title: 'Recruitment - overall', + subtitle: `Total participants: ` + + json['recruitment']['overall']['total_recruitment'] || -1, }, { content: json['recruitment']['overall'] && json['recruitment']['overall']['total_recruitment'] > 0 ? ( <> -
- -
- {showFiltersBreakdown && ( -
- { - updateFilters(formDataObj, 'siteBreakdown'); - }} - /> -
- )} -
15 - ? 'site-breakdown-grid-one-column' - : undefined - }> + {showFilters('siteBreakdown')} +
{Object .keys(chartDetails['siteBreakdown']) .map((chartID) => ( @@ -148,12 +195,13 @@ const Recruitment = (props) => {

There have been no candidates registered yet.

), title: 'Recruitment - site breakdown', - onToggleFilters: () => { - setShowFiltersBreakdown((prev) => !prev); - }, + subtitle: 'Total participants: ' + + json['recruitment']['overall']['total_recruitment'] || -1, }, { - content: + content: <> + {showFilters('projectBreakdown')} + {showChart('projectBreakdown', 'agedistribution_line')}
{ } } )} -
, +
+ , title: 'Recruitment - project breakdown', + subtitle: `Projects: ${getTotalProjectsCount()}`, }, { content: @@ -192,6 +242,7 @@ const Recruitment = (props) => { )}
, title: 'Recruitment - cohort breakdown', + subtitle: `Cohorts: ${getTotalCohortsCount()}`, }, ]} /> diff --git a/modules/statistics/jsx/widgets/studyprogression.js b/modules/statistics/jsx/widgets/studyprogression.js index 326de2a9b15..df14c482aad 100644 --- a/modules/statistics/jsx/widgets/studyprogression.js +++ b/modules/statistics/jsx/widgets/studyprogression.js @@ -13,9 +13,7 @@ import {setupCharts} from './helpers/chartBuilder'; */ const StudyProgression = (props) => { const [loading, setLoading] = useState(true); - const [showFiltersScans, setShowFiltersScans] = useState(false); - const [showFiltersRecruitment, setShowFiltersRecruitment] = useState(false); - const [activeView, setActiveView] = useState(0); + const [showFiltersBreakdown, setShowFiltersBreakdown] = useState(false); let json = props.data; @@ -30,10 +28,12 @@ const StudyProgression = (props) => { label: 'Scans', legend: 'under', options: {line: 'line'}, + chartObject: null, + titlePrefix: 'Month', }, }, 'total_recruitment': { - 'siterecruitment_line': { + 'siterecruitment_bymonth': { sizing: 11, title: 'Recruitment per site', filters: '', @@ -41,6 +41,8 @@ const StudyProgression = (props) => { dataType: 'line', legend: '', options: {line: 'line'}, + chartObject: null, + titlePrefix: 'Month', }, }, }); @@ -68,22 +70,22 @@ const StudyProgression = (props) => { chartDetails, setChartDetails); }; + // Helper function to calculate total recruitment + const getTotalRecruitment = () => { + return json['studyprogression']['recruitment'] + ['overall']['total_recruitment'] || -1; + }; + return loading ? : ( <> { - setActiveView(index); setupCharts(false, chartDetails); // reset filters when switching views - if (index === 0) { - setShowFiltersScans(false); - } else if (index === 1) { - setShowFiltersRecruitment(false); - } + setShowFiltersBreakdown(false); }} views={[ { @@ -136,12 +138,12 @@ const StudyProgression = (props) => { - {showFiltersScans && ( + {showFiltersBreakdown && ( {

There have been no scans yet.

), title: 'Study Progression - site scans', - onToggleFilters: () => setShowFiltersScans((prev) => !prev), + subtitle: 'Total scans: ' + + json['studyprogression']['total_scans'] || -1, }, { content: json['studyprogression']['recruitment']['overall'][ @@ -175,12 +178,12 @@ const StudyProgression = (props) => { - {showFiltersRecruitment && ( + {showFiltersBreakdown && ( { }} /> )} - {showChart('total_recruitment', 'siterecruitment_line')} + {showChart('total_recruitment', 'siterecruitment_bymonth')} ) : (

There have been no candidates registered yet.

), title: 'Study Progression - site recruitment', - onToggleFilters: () => setShowFiltersRecruitment((prev) => !prev), + subtitle: `Total recruitment: ${getTotalRecruitment()}`, }, ]} /> diff --git a/modules/statistics/php/charts.class.inc b/modules/statistics/php/charts.class.inc index 706630da4d9..9d6db8716af 100644 --- a/modules/statistics/php/charts.class.inc +++ b/modules/statistics/php/charts.class.inc @@ -97,8 +97,10 @@ class Charts extends \NDB_Page return $this->_handleSiteSexBreakdown(); case 'scans_bymonth': return $this->_handleScansByMonth(); - case 'siterecruitment_line': + case 'siterecruitment_bymonth': return $this->_handleSiteLineData(); + case 'agedistribution_line': + return $this->_handleAgeDistributionByProject(); default: return new \LORIS\Http\Response\JSON\NotFound(); } @@ -113,8 +115,7 @@ class Charts extends \NDB_Page { $DB = \NDB_Factory::singleton()->database(); - $params = $this->_parseGetParameters(); - $conditions = $this->_buildQueryConditions($params); + $conditions = $this->_buildQueryConditions(); $recruitmentBySiteData = []; @@ -122,10 +123,9 @@ class Charts extends \NDB_Page $list_of_sites = $user->getStudySites(); $data = $DB->pselectColWithIndexKey( - " - SELECT COUNT(c.CandID), c.RegistrationCenterID as CenterID + "SELECT COUNT(c.CandID), c.RegistrationCenterID as CenterID FROM candidate c - {$conditions['cohortJoin']} + {$conditions['sessionJoin']} {$conditions['participantStatusJoin']} WHERE c.Active='Y' AND c.Entity_type='Human' {$conditions['projectQuery']} @@ -133,8 +133,7 @@ class Charts extends \NDB_Page {$conditions['visitQuery']} {$conditions['siteQuery']} {$conditions['participantStatusQuery']} - GROUP BY c.RegistrationCenterID - ", + GROUP BY c.RegistrationCenterID", [], "CenterID" ); @@ -159,8 +158,7 @@ class Charts extends \NDB_Page $DB = \NDB_Factory::singleton()->database(); $sexData = []; - $params = $this->_parseGetParameters(); - $conditions = $this->_buildQueryConditions($params); + $conditions = $this->_buildQueryConditions(); $user = \NDB_Factory::singleton()->user(); $list_of_sites = $user->getStudySites(); @@ -171,7 +169,7 @@ class Charts extends \NDB_Page c.RegistrationCenterID as SiteID, c.Sex as Sex FROM candidate c - {$conditions['cohortJoin']} + {$conditions['sessionJoin']} {$conditions['participantStatusJoin']} WHERE c.Active='Y' AND c.Entity_type='Human' {$conditions['projectQuery']} @@ -216,19 +214,16 @@ class Charts extends \NDB_Page */ private function _handleAgePieData() { - $params = $this->_parseGetParameters(); - - $conditions = $this->_buildQueryConditions($params); + $conditions = $this->_buildQueryConditions(); $DB = \NDB_Factory::singleton()->database(); $dates = $DB->pselect( "SELECT DISTINCT c.CandID, c.DoB, c.Date_registered FROM candidate c - {$conditions['cohortJoin']} + {$conditions['sessionJoin']} {$conditions['participantStatusJoin']} WHERE c.DoB IS NOT NULL - AND c.DoB <= c.date_registered AND c.Active='Y' AND c.Entity_type='Human' {$conditions['projectQuery']} @@ -270,10 +265,108 @@ class Charts extends \NDB_Page $label = $startOfSplit . '-' . $endOfSplit; $recruitmentByAgeData[] = ["label" => $label, "total" => $count]; } + // sort the labels + usort( + $recruitmentByAgeData, + function ($a, $b) { + return $a['label'] <=> $b['label']; + } + ); return (new \LORIS\Http\Response\JsonResponse($recruitmentByAgeData)); } + /** + * Handle an incoming request for age distribution by project breakdown. + * + * @return ResponseInterface + */ + private function _handleAgeDistributionByProject() + { + $conditions = $this->_buildQueryConditions(); + $user = \NDB_Factory::singleton()->user(); + + $DB = \NDB_Factory::singleton()->database(); + $list_of_projects = $user->getProjects(); + + // Sort projects by name + usort( + $list_of_projects, + function ($p1, $p2) { + return strcmp($p1->getName(), $p2->getName()); + } + ); + + $ages_per_project = $DB->pselect( + "SELECT p.ProjectID, p.Name as ProjectName, c.DoB, c.Date_registered + FROM candidate c + {$conditions['sessionJoin']} + {$conditions['participantStatusJoin']} + JOIN Project p ON p.ProjectID=c.RegistrationProjectID + WHERE c.DoB IS NOT NULL + AND c.Active='Y' + AND c.Entity_type='Human' + {$conditions['projectQuery']} + {$conditions['cohortQuery']} + {$conditions['visitQuery']} + {$conditions['siteQuery']} + {$conditions['participantStatusQuery']}", + [] + ); + + // Initialize age distribution data + $ageData = []; + $allAges = []; + + // Process age data by project + $agesByProject = []; + foreach ($ages_per_project as $row) { + $projectID = $row['ProjectID']; + $agesByProject[$projectID]['name'] = $row['ProjectName']; + + // Calculate age from date registered + $ageOb = \Utility::calculateAge( + $row['DoB'], + $row['Date_registered'] + ); + $age = $ageOb['year']; + + // Track all ages for labels + $allAges[$age] = true; + + if (!isset($agesByProject[$projectID]['ages'])) { + $agesByProject[$projectID]['ages'] = []; + } + if (!isset($agesByProject[$projectID]['ages'][$age])) { + $agesByProject[$projectID]['ages'][$age] = 1; + } else { + $agesByProject[$projectID]['ages'][$age]++; + } + } + + // Create sorted labels (individual ages) + $ageLabels = array_keys($allAges); + sort($ageLabels, SORT_NUMERIC); + + $ageData['labels'] = $ageLabels; + + // Format data for each project + $ageData['datasets'] = []; + foreach ($agesByProject as $projectData) { + $data = []; + foreach ($ageLabels as $age) { + $data[] = $projectData['ages'][$age] ?? 0; + } + + $ageData['datasets'][] = [ + 'name' => $projectData['name'], + 'data' => $data + ]; + } + + return new \LORIS\Http\Response\JsonResponse($ageData); + } + /** * Handle an incoming request for ethnicity pie data. * @@ -281,16 +374,14 @@ class Charts extends \NDB_Page */ private function _handleEthnicityPieData() { - $params = $this->_parseGetParameters(); - - $conditions = $this->_buildQueryConditions($params); + $conditions = $this->_buildQueryConditions(); $DB = \NDB_Factory::singleton()->database(); $candidates = $DB->pselect( "SELECT DISTINCT c.CandID, c.Ethnicity FROM candidate c - {$conditions['cohortJoin']} + {$conditions['sessionJoin']} {$conditions['participantStatusJoin']} WHERE c.Active='Y' AND c.Entity_type='Human' @@ -342,8 +433,7 @@ class Charts extends \NDB_Page { $DB = \NDB_Factory::singleton()->database(); - $params = $this->_parseGetParameters(); - $conditions = $this->_buildQueryConditions($params, true); + $conditions = $this->_buildQueryConditions(true); $user = \NDB_Factory::singleton()->user(); $list_of_sites = $user->getStudySites(); @@ -359,6 +449,7 @@ class Charts extends \NDB_Page FROM files f LEFT JOIN parameter_file pf USING (FileID) LEFT JOIN session s ON (s.ID=f.SessionID) + {$conditions['candJoin']} {$conditions['participantStatusJoin']} JOIN parameter_type pt USING (ParameterTypeID) WHERE pt.Name='acquisition_date' @@ -448,8 +539,7 @@ class Charts extends \NDB_Page { $DB = \NDB_Factory::singleton()->database(); - $params = $this->_parseGetParameters(); - $conditions = $this->_buildQueryConditions($params, true); + $conditions = $this->_buildQueryConditions(true); $recruitmentData = []; $recruitmentStartDate = $DB->pselectOne( @@ -480,10 +570,11 @@ class Charts extends \NDB_Page c.RegistrationCenterID as SiteID FROM candidate c {$conditions['participantStatusJoin']} - {$conditions['cohortJoin']} + {$conditions['sessionJoin']} WHERE c.Entity_type='Human' {$conditions['projectQuery']} {$conditions['cohortQuery']} + {$conditions['visitQuery']} {$conditions['participantStatusQuery']} GROUP BY MONTH(c.Date_registered), YEAR(c.Date_registered), @@ -524,85 +615,57 @@ class Charts extends \NDB_Page return new \LORIS\Http\Response\JsonResponse($recruitmentData); } - /** - * Helper to parse the GET parameters from the incoming request. - * - * @return array - */ - private function _parseGetParameters() - { - $selectedProjects = empty($_GET['selectedProjects']) - || $_GET['selectedProjects'] === 'null' - || $_GET['selectedProjects'] === 'undefined' - ? null : explode(",", $_GET['selectedProjects']); - $selectedCohorts = empty($_GET['selectedCohorts']) - || $_GET['selectedCohorts'] === 'null' - || $_GET['selectedCohorts'] === 'undefined' - ? null : explode(",", $_GET['selectedCohorts']); - $selectedSites = empty($_GET['selectedSites']) - || $_GET['selectedSites'] === 'null' - || $_GET['selectedSites'] === 'undefined' - ? null : explode(",", $_GET['selectedSites']); - $selectedVisits = empty($_GET['selectedVisits']) - || $_GET['selectedVisits'] === 'null' - || $_GET['selectedVisits'] === 'undefined' - ? null : explode(",", $_GET['selectedVisits']); - $selectedParticipantStatus = empty( - $_GET['selectedParticipantStatus'] - ) - || $_GET['selectedParticipantStatus'] === 'null' - || $_GET['selectedParticipantStatus'] === 'undefined' ? null - : explode( - ",", - $_GET['selectedParticipantStatus'] - ); - - return [ - 'selectedProjects' => $selectedProjects, - 'selectedCohorts' => $selectedCohorts, - 'selectedSites' => $selectedSites, - 'selectedVisits' => $selectedVisits, - 'selectedParticipantStatus' => $selectedParticipantStatus, - ]; - } - /** * Helper to generate query conditions for for incoming requests. * - * @param array $params The parameters from the incoming request. - * @param bool $scansbymonth Whether or not the request is for scans by month. + * @param bool $scansbymonth Whether or not the request is for scans by month. * * @return array */ - private function _buildQueryConditions( - $params, - $scansbymonth = false - ) { + private function _buildQueryConditions($scansbymonth = false) + { $user = \NDB_Factory::singleton()->user(); - $projectQuery = ''; - $cohortQuery = ''; - $cohortJoin = ''; - $visitQuery = ''; - $PSJoin = ''; + $cohortQuery = ''; + $sessionJoin = ''; + $visitQuery = ''; + $PSJoin = ''; + $candJoin = ''; $participantStatusQuery = ''; - if (!is_null($params['selectedProjects'])) { - $projectString = "'" . implode("','", $params['selectedProjects']) . "'"; - $projectQuery = " AND c.RegistrationProjectID IN ({$projectString}) "; + foreach ($_GET as $key => $value) { + if (str_contains($key, 'selected') + && !str_contains($key, 'date') + && $value != 'undefined' + ) { + $_GET[$key] = "('".str_replace(",", "','", $value)."')"; + } + } + + if (($_GET['selectedProjects'] ?? "undefined") != 'undefined') { + $candJoin = "JOIN candidate c ON c.ID=s.CandidateID"; + $projectQuery = " AND c.RegistrationProjectID IN " + . $_GET['selectedProjects']; + } else { + $userProjects = $user->getProjectIDs(); + $projectList = "'" . implode("','", $userProjects) . "'"; + $projectQuery = " AND c.RegistrationProjectID IN ({$projectList}) "; + if ($scansbymonth === true) { + $projectQuery = " AND s.ProjectID IN ({$projectList}) "; + $sessionJoin = "JOIN session s ON s.CandidateID=c.ID"; + } } - if (!is_null($params['selectedCohorts'])) { - $cohortString = "'" . implode("','", $params['selectedCohorts']) . "'"; - $cohortQuery = " AND s.CohortID IN ({$cohortString}) "; - $cohortJoin = "JOIN session s ON s.CandidateID=c.ID"; + if (($_GET['selectedCohorts'] ?? "undefined") != 'undefined') { + $cohortQuery = " AND s.CohortID IN {$_GET['selectedCohorts']} "; + $sessionJoin = "JOIN session s ON s.CandidateID=c.ID"; } - if (!is_null($params['selectedSites'])) { + + if (($_GET['selectedSites'] ?? "undefined") != 'undefined') { // Set site query if selected - $siteString = "'" . implode("','", $params['selectedSites']) . "'"; - $siteQuery = " AND c.RegistrationCenterID IN ({$siteString}) "; + $siteQuery = " AND c.RegistrationCenterID IN {$_GET['selectedSites']} "; if ($scansbymonth === true) { - $siteQuery = " AND s.CenterID IN ({$siteString}) "; + $siteQuery = " AND s.CenterID IN {$_GET['selectedSites']} "; } } else { // If not selected, only take user sites @@ -613,41 +676,48 @@ class Charts extends \NDB_Page $siteQuery = " AND s.CenterID IN ({$centerList}) "; } } - if (!is_null($params['selectedVisits'])) { + + if (($_GET['selectedVisits'] ?? "undefined") != 'undefined') { // Set visit query if visits selected - $visitString = "'" . implode("','", $params['selectedVisits']) . "'"; - $visitQuery = " AND s.Visit_label IN ({$visitString}) "; - // since they are the same, if visits are selected, - // then the cohort string is overwritten - $cohortJoin = "JOIN session s ON s.CandidateID=c.ID"; + $visitQuery = " AND s.Visit_label IN {$_GET['selectedVisits']} "; + $sessionJoin = "JOIN session s ON s.CandidateID=c.ID"; } - if (!is_null($params['selectedParticipantStatus'])) { - $PSJoin = 'LEFT JOIN participant_status ps ON c.ID=ps.CandidateID'; - $participantStatusString = "'" . implode( - "','", - $params['selectedParticipantStatus'] - ) . "'"; + if (($_GET['selectedParticipantStatus'] ?? "undefined") != 'undefined') { + $candJoin = "JOIN candidate c ON c.ID=s.CandidateID"; + $PSJoin = 'LEFT JOIN participant_status ps ON c.ID=ps.CandidateID'; // Null participant status counts as Active because // sometimes users do not update the participant_status tab - if (in_array('1', $params['selectedParticipantStatus'])) { + if (str_contains($_GET['selectedParticipantStatus'] ?? '', '1')) { $participantStatusQuery = " AND ( - ps.participant_status IN ({$participantStatusString}) + ps.participant_status IN {$_GET['selectedParticipantStatus']} OR ps.participant_status IS NULL )"; } else { $participantStatusQuery = " AND ps.participant_status - IN ({$participantStatusString}) "; + IN {$_GET['selectedParticipantStatus']} "; } } + if (($_GET['dateRegisteredStart'] ?? "undefined") != 'undefined') { + $candJoin = "JOIN candidate c ON c.ID=s.CandidateID"; + $projectQuery .= " AND c.Date_registered" + . " >= '{$_GET['dateRegisteredStart']}'"; + } + if (($_GET['dateRegisteredEnd'] ?? "undefined") != 'undefined') { + $candJoin = "JOIN candidate c ON c.ID=s.CandidateID"; + $projectQuery .= " AND c.Date_registered" + ." <= '{$_GET['dateRegisteredEnd']}'"; + } + return [ 'projectQuery' => $projectQuery, 'cohortQuery' => $cohortQuery, - 'cohortJoin' => $cohortJoin, + 'sessionJoin' => $sessionJoin, 'visitQuery' => $visitQuery, 'siteQuery' => $siteQuery, 'participantStatusJoin' => $PSJoin, 'participantStatusQuery' => $participantStatusQuery, + 'candJoin' => $candJoin, ]; } diff --git a/modules/statistics/php/widgets.class.inc b/modules/statistics/php/widgets.class.inc index 0e849ad0cb8..803c94892f2 100644 --- a/modules/statistics/php/widgets.class.inc +++ b/modules/statistics/php/widgets.class.inc @@ -59,13 +59,18 @@ class Widgets extends \NDB_Page implements ETagCalculator if (isset($this->_cache)) { return $this->_cache; } - $factory = \NDB_Factory::singleton(); - $config = $factory->config(); - $db = $request->getAttribute('loris')->getDatabaseConnection(); - + $factory = \NDB_Factory::singleton(); + $config = $factory->config(); + $db = $request->getAttribute('loris')->getDatabaseConnection(); + $user = $factory->user(); + $projects = $user->getProjectIDs(); + $centerIDs = $user->getCenterIDs(); $recruitmentTarget = $config->getSetting('recruitmentTarget'); - $recruitmentRaw = iterator_to_array( + $projectString = "('".implode("','", array_map('strval', $projects))."')"; + $centerString = "('".implode("','", array_map('strval', $centerIDs))."')"; + + $recruitmentRaw = iterator_to_array( $db->pselect( "SELECT COUNT(*) as Count, @@ -73,30 +78,38 @@ class Widgets extends \NDB_Page implements ETagCalculator c.RegistrationProjectID as ProjectID FROM candidate c WHERE c.Active='Y' AND c.Entity_type='Human' - AND c.RegistrationCenterID <> 1 + AND c.RegistrationProjectID IN $projectString + AND c.RegistrationCenterID IN $centerString GROUP BY c.Sex, c.RegistrationProjectID", [] ) ); - $totalScans = array_sum(array_column($recruitmentRaw, 'Count')); - $recruitment = [ + $total_participants = array_sum(array_column($recruitmentRaw, 'Count')); + $totalScans = $db->pselectOne( + "SELECT COUNT(distinct s.ID) + FROM files f + LEFT JOIN parameter_file pf USING (FileID) + LEFT JOIN session s ON (s.ID=f.SessionID) + JOIN parameter_type pt USING (ParameterTypeID) + WHERE pt.Name='acquisition_date' + AND s.ProjectID IN {$projectString} + AND s.CenterID IN {$centerString}", + [] + ); + $recruitment = [ 'overall' => $this->_createProjectProgressBar( 'overall', "Overall Recruitment", $recruitmentTarget, - $totalScans, + $total_participants, $recruitmentRaw, ) ]; - $user = $factory->user(); - $projects = $user->getProjectIDs(); - $projectOptions = []; $cohortOptions = []; $visitOptions = []; $recruitmentCohorts = []; - $centerIDs = $user->getCenterIDs(); $sites = \Utility::getSiteList(); $studyWidgets = $this->_collectStudyProgressionWidgets($user); @@ -109,6 +122,7 @@ class Widgets extends \NDB_Page implements ETagCalculator foreach ($projects as $pid) { // Set project recruitment data $projectInfo = $config->getProjectSettings(intval(strval($pid))); + $projectOptions[intval(strval($pid))] = $projectInfo['Name'] ?? ""; if (is_null($projectInfo)) { throw new \LorisException( 'No project settings exist in the Database for ' . @@ -152,6 +166,13 @@ class Widgets extends \NDB_Page implements ETagCalculator $db, $sp["Count"] ); + $cohortVisits = \Utility::getVisitsForCohort( + intval($sp["CohortID"]) + ); + foreach ($cohortVisits as $visitLabel => $visitName) { + // get visit id + $visitOptions[$visitLabel] = $visitName; + } } } diff --git a/raisinbread/RB_files/RB_candidate.sql b/raisinbread/RB_files/RB_candidate.sql index 584b97bbd92..0941566a003 100644 --- a/raisinbread/RB_files/RB_candidate.sql +++ b/raisinbread/RB_files/RB_candidate.sql @@ -1,676 +1,676 @@ SET FOREIGN_KEY_CHECKS=0; TRUNCATE TABLE `candidate`; LOCK TABLES `candidate` WRITE; -INSERT INTO `candidate` (`ID`, `CandID`, `PSCID`, `ExternalID`, `DoB`, `DoD`, `EDC`, `Sex`, `RegistrationCenterID`, `RegistrationProjectID`, `Ethnicity`, `Active`, `Date_active`, `RegisteredBy`, `UserID`, `Date_registered`, `flagged_caveatemptor`, `flagged_reason`, `flagged_other`, `flagged_other_status`, `Testdate`, `Entity_type`, `ProbandSex`, `ProbandDoB`) VALUES (162,300001,'MTL001',NULL,'2003-10-31',NULL,'2003-11-30','Male',2,1,NULL,'Y','2016-01-23',NULL,'admin','2016-01-23','false',NULL,NULL,NULL,'2019-06-20 12:10:04','Human',NULL,NULL); -INSERT INTO `candidate` (`ID`, `CandID`, `PSCID`, `ExternalID`, `DoB`, `DoD`, `EDC`, `Sex`, `RegistrationCenterID`, `RegistrationProjectID`, `Ethnicity`, `Active`, `Date_active`, `RegisteredBy`, `UserID`, `Date_registered`, `flagged_caveatemptor`, `flagged_reason`, `flagged_other`, `flagged_other_status`, `Testdate`, `Entity_type`, `ProbandSex`, `ProbandDoB`) VALUES (163,300002,'MTL002',NULL,'2002-10-02',NULL,'2002-11-02','Male',2,1,NULL,'Y','2016-05-16',NULL,'admin','2016-05-16','false',NULL,NULL,NULL,'2019-06-20 12:10:04','Human',NULL,NULL); -INSERT INTO `candidate` (`ID`, `CandID`, `PSCID`, `ExternalID`, `DoB`, `DoD`, `EDC`, `Sex`, `RegistrationCenterID`, `RegistrationProjectID`, `Ethnicity`, `Active`, `Date_active`, `RegisteredBy`, `UserID`, `Date_registered`, `flagged_caveatemptor`, `flagged_reason`, `flagged_other`, `flagged_other_status`, `Testdate`, `Entity_type`, `ProbandSex`, `ProbandDoB`) VALUES (164,300003,'MTL003',NULL,'2004-01-31',NULL,'2004-02-29','Male',2,1,NULL,'Y','2016-02-24',NULL,'admin','2016-02-24','false',3,'assda',NULL,'2019-06-20 12:10:04','Human',NULL,NULL); -INSERT INTO `candidate` (`ID`, `CandID`, `PSCID`, `ExternalID`, `DoB`, `DoD`, `EDC`, `Sex`, `RegistrationCenterID`, `RegistrationProjectID`, `Ethnicity`, `Active`, `Date_active`, `RegisteredBy`, `UserID`, `Date_registered`, `flagged_caveatemptor`, `flagged_reason`, `flagged_other`, `flagged_other_status`, `Testdate`, `Entity_type`, `ProbandSex`, `ProbandDoB`) VALUES (165,300004,'MTL004',NULL,'2004-03-08',NULL,'2004-04-08','Male',2,1,NULL,'Y','2016-02-01',NULL,'admin','2016-02-01','false',NULL,NULL,NULL,'2019-06-20 12:10:04','Human',NULL,NULL); -INSERT INTO `candidate` (`ID`, `CandID`, `PSCID`, `ExternalID`, `DoB`, `DoD`, `EDC`, `Sex`, `RegistrationCenterID`, `RegistrationProjectID`, `Ethnicity`, `Active`, `Date_active`, `RegisteredBy`, `UserID`, `Date_registered`, `flagged_caveatemptor`, `flagged_reason`, `flagged_other`, `flagged_other_status`, `Testdate`, `Entity_type`, `ProbandSex`, `ProbandDoB`) VALUES (166,300005,'MTL005',NULL,'2004-11-28',NULL,'2004-12-28','Male',2,1,NULL,'Y','2016-06-12',NULL,'admin','2016-06-12','true',3,'asd',NULL,'2019-06-20 12:10:04','Human','Male','2015-11-30'); -INSERT INTO `candidate` (`ID`, `CandID`, `PSCID`, `ExternalID`, `DoB`, `DoD`, `EDC`, `Sex`, `RegistrationCenterID`, `RegistrationProjectID`, `Ethnicity`, `Active`, `Date_active`, `RegisteredBy`, `UserID`, `Date_registered`, `flagged_caveatemptor`, `flagged_reason`, `flagged_other`, `flagged_other_status`, `Testdate`, `Entity_type`, `ProbandSex`, `ProbandDoB`) VALUES (167,300006,'MTL006',NULL,'2003-12-04',NULL,'2004-01-04','Male',2,1,NULL,'Y','2016-06-11',NULL,'admin','2016-06-11','false',NULL,NULL,NULL,'2019-06-20 12:10:04','Human',NULL,NULL); -INSERT INTO `candidate` (`ID`, `CandID`, `PSCID`, `ExternalID`, `DoB`, `DoD`, `EDC`, `Sex`, `RegistrationCenterID`, `RegistrationProjectID`, `Ethnicity`, `Active`, `Date_active`, `RegisteredBy`, `UserID`, `Date_registered`, `flagged_caveatemptor`, `flagged_reason`, `flagged_other`, `flagged_other_status`, `Testdate`, `Entity_type`, `ProbandSex`, `ProbandDoB`) VALUES (168,300007,'MTL007',NULL,'2004-03-20',NULL,'2004-04-20','Male',2,1,NULL,'Y','2016-05-05',NULL,'admin','2016-05-05','false',NULL,NULL,NULL,'2019-06-20 12:10:04','Human',NULL,NULL); 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+INSERT INTO `candidate` (`ID`, `CandID`, `PSCID`, `ExternalID`, `DoB`, `DoD`, `EDC`, `Sex`, `RegistrationCenterID`, `RegistrationProjectID`, `Ethnicity`, `Active`, `Date_active`, `RegisteredBy`, `UserID`, `Date_registered`, `flagged_caveatemptor`, `flagged_reason`, `flagged_other`, `flagged_other_status`, `Testdate`, `Entity_type`, `ProbandSex`, `ProbandDoB`) VALUES (775,400444,'ROM444',NULL,'1986-05-02',NULL,'2016-11-02','Female',4,2,'Asian','Y','2016-04-28',NULL,'admin','2016-04-28','false',NULL,NULL,NULL,'2019-06-20 12:10:04','Human',NULL,NULL); +INSERT INTO `candidate` (`ID`, `CandID`, `PSCID`, `ExternalID`, `DoB`, `DoD`, `EDC`, `Sex`, `RegistrationCenterID`, `RegistrationProjectID`, `Ethnicity`, `Active`, `Date_active`, `RegisteredBy`, `UserID`, `Date_registered`, `flagged_caveatemptor`, `flagged_reason`, `flagged_other`, `flagged_other_status`, `Testdate`, `Entity_type`, `ProbandSex`, `ProbandDoB`) VALUES (776,400445,'ROM445',NULL,'1986-04-05',NULL,'2016-10-05','Female',4,3,NULL,'Y','2016-01-17',NULL,'admin','2016-01-17','false',NULL,NULL,NULL,'2019-06-20 12:10:04','Human',NULL,NULL); +INSERT INTO `candidate` (`ID`, `CandID`, `PSCID`, `ExternalID`, `DoB`, `DoD`, `EDC`, `Sex`, `RegistrationCenterID`, `RegistrationProjectID`, `Ethnicity`, `Active`, `Date_active`, `RegisteredBy`, `UserID`, `Date_registered`, `flagged_caveatemptor`, `flagged_reason`, `flagged_other`, `flagged_other_status`, `Testdate`, `Entity_type`, `ProbandSex`, `ProbandDoB`) VALUES (777,400446,'ROM446',NULL,'1986-05-31',NULL,'2016-07-31','Male',4,3,NULL,'Y','2016-03-21',NULL,'admin','2016-03-21','false',NULL,NULL,NULL,'2019-06-20 12:10:04','Human',NULL,NULL); +INSERT INTO `candidate` (`ID`, `CandID`, `PSCID`, `ExternalID`, `DoB`, `DoD`, `EDC`, `Sex`, `RegistrationCenterID`, `RegistrationProjectID`, `Ethnicity`, `Active`, `Date_active`, `RegisteredBy`, `UserID`, `Date_registered`, `flagged_caveatemptor`, `flagged_reason`, `flagged_other`, `flagged_other_status`, `Testdate`, `Entity_type`, `ProbandSex`, `ProbandDoB`) VALUES (778,400447,'ROM447',NULL,'1986-01-04',NULL,'2016-06-04','Male',4,3,NULL,'Y','2016-06-06',NULL,'admin','2016-06-06','false',NULL,NULL,NULL,'2019-06-20 12:10:04','Human',NULL,NULL); +INSERT INTO `candidate` (`ID`, `CandID`, `PSCID`, `ExternalID`, `DoB`, `DoD`, `EDC`, `Sex`, `RegistrationCenterID`, `RegistrationProjectID`, `Ethnicity`, `Active`, `Date_active`, `RegisteredBy`, `UserID`, `Date_registered`, `flagged_caveatemptor`, `flagged_reason`, `flagged_other`, `flagged_other_status`, `Testdate`, `Entity_type`, `ProbandSex`, `ProbandDoB`) VALUES (779,400448,'ROM448',NULL,'1986-02-26',NULL,'2016-06-26','Male',4,3,NULL,'Y','2016-06-15',NULL,'admin','2016-06-15','false',NULL,NULL,NULL,'2019-06-20 12:10:04','Human',NULL,NULL); +INSERT INTO `candidate` (`ID`, `CandID`, `PSCID`, `ExternalID`, `DoB`, `DoD`, `EDC`, `Sex`, `RegistrationCenterID`, `RegistrationProjectID`, `Ethnicity`, `Active`, `Date_active`, `RegisteredBy`, `UserID`, `Date_registered`, `flagged_caveatemptor`, `flagged_reason`, `flagged_other`, `flagged_other_status`, `Testdate`, `Entity_type`, `ProbandSex`, `ProbandDoB`) VALUES (780,400449,'ROM449',NULL,'1986-01-05',NULL,'2016-02-05','Male',4,3,NULL,'Y','2016-06-14',NULL,'admin','2016-06-14','false',NULL,NULL,NULL,'2019-06-20 12:10:04','Human',NULL,NULL); +INSERT INTO `candidate` (`ID`, `CandID`, `PSCID`, `ExternalID`, `DoB`, `DoD`, `EDC`, `Sex`, `RegistrationCenterID`, `RegistrationProjectID`, `Ethnicity`, `Active`, `Date_active`, `RegisteredBy`, `UserID`, `Date_registered`, `flagged_caveatemptor`, `flagged_reason`, `flagged_other`, `flagged_other_status`, `Testdate`, `Entity_type`, `ProbandSex`, `ProbandDoB`) VALUES (781,400450,'ROM450',NULL,'1986-04-05',NULL,'2016-09-05','Female',4,2,'Asian','Y','2016-05-10',NULL,'admin','2016-05-10','false',NULL,NULL,NULL,'2019-06-20 12:10:04','Human',NULL,NULL); +INSERT INTO `candidate` (`ID`, `CandID`, `PSCID`, `ExternalID`, `DoB`, `DoD`, `EDC`, `Sex`, `RegistrationCenterID`, `RegistrationProjectID`, `Ethnicity`, `Active`, `Date_active`, `RegisteredBy`, `UserID`, `Date_registered`, `flagged_caveatemptor`, `flagged_reason`, `flagged_other`, `flagged_other_status`, `Testdate`, `Entity_type`, `ProbandSex`, `ProbandDoB`) VALUES (782,400451,'ROM451',NULL,'1986-01-26',NULL,'2016-05-26','Female',4,3,NULL,'Y','2016-05-24',NULL,'admin','2016-05-24','false',NULL,NULL,NULL,'2019-06-20 12:10:04','Human',NULL,NULL); +INSERT INTO `candidate` (`ID`, `CandID`, `PSCID`, `ExternalID`, `DoB`, `DoD`, `EDC`, `Sex`, `RegistrationCenterID`, `RegistrationProjectID`, `Ethnicity`, `Active`, `Date_active`, `RegisteredBy`, `UserID`, `Date_registered`, `flagged_caveatemptor`, `flagged_reason`, `flagged_other`, `flagged_other_status`, `Testdate`, `Entity_type`, `ProbandSex`, `ProbandDoB`) VALUES (783,400452,'ROM452',NULL,'1986-04-22',NULL,'2016-07-22','Male',4,1,'Hispanic','Y','2016-05-15',NULL,'admin','2016-05-15','false',NULL,NULL,NULL,'2019-06-20 12:10:04','Human',NULL,NULL); +INSERT INTO `candidate` (`ID`, `CandID`, `PSCID`, `ExternalID`, `DoB`, `DoD`, `EDC`, `Sex`, `RegistrationCenterID`, `RegistrationProjectID`, `Ethnicity`, `Active`, `Date_active`, `RegisteredBy`, `UserID`, `Date_registered`, `flagged_caveatemptor`, `flagged_reason`, `flagged_other`, `flagged_other_status`, `Testdate`, `Entity_type`, `ProbandSex`, `ProbandDoB`) VALUES (784,400453,'ROM453',NULL,'1986-04-12',NULL,'2016-09-12','Female',4,3,NULL,'Y','2016-02-17',NULL,'admin','2016-02-17','false',NULL,NULL,NULL,'2019-06-20 12:10:04','Human',NULL,NULL); 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UNLOCK TABLES; -SET FOREIGN_KEY_CHECKS=1; +SET FOREIGN_KEY_CHECKS=1; \ No newline at end of file