diff --git a/.gitignore b/.gitignore index 96dfe98b..1ad56228 100644 --- a/.gitignore +++ b/.gitignore @@ -54,3 +54,5 @@ dmypy.json # OSX Files .DS_Store + +.venv \ No newline at end of file diff --git a/camelot/parsers/lattice.py b/camelot/parsers/lattice.py index 02780f78..9d494226 100644 --- a/camelot/parsers/lattice.py +++ b/camelot/parsers/lattice.py @@ -291,10 +291,10 @@ def scale_areas(areas): ) for bbox, parse in self.table_bbox_parses.items(): - joints = parse["joints"] + joints: list[tuple[float, float]] = parse["joints"] # Merge x coordinates that are close together - line_tol = self.line_tol + line_tol: int = self.line_tol # Sort the joints, make them a list of lists (instead of sets) joints_normalized = list( map(lambda x: list(x), sorted(joints, key=lambda j: -j[0])) diff --git a/camelot/utils.py b/camelot/utils.py index dabc769d..61385b69 100644 --- a/camelot/utils.py +++ b/camelot/utils.py @@ -38,7 +38,7 @@ from pdfminer.pdfinterp import PDFPageInterpreter from pdfminer.pdfinterp import PDFResourceManager from pdfminer.pdfpage import PDFPage -from pdfminer.pdfpage import PDFTextExtractionNotAllowed +from pdfminer.pdfdocument import PDFTextExtractionNotAllowed from pdfminer.pdfparser import PDFParser from pypdf._utils import StrByteType @@ -48,7 +48,7 @@ # https://github.com/pandas-dev/pandas/blob/master/pandas/io/common.py -def is_url(url): +def is_url(url) -> bool: """Check to see if a URL has a valid protocol. Parameters @@ -67,8 +67,8 @@ def is_url(url): return False -def random_string(length): - """Generate a random string . +def random_string(length: int) -> str: + """Generate a random string. Parameters ---------- @@ -80,13 +80,10 @@ def random_string(length): string returns a random string """ - ret = "" - while length: - ret += random.choice( # noqa S311 - string.digits + string.ascii_lowercase + string.ascii_uppercase - ) - length -= 1 - return ret + return "".join( + random.choice(string.digits + string.ascii_lowercase + string.ascii_uppercase) + for _ in range(length) + ) def download_url(url: str) -> StrByteType | Path: @@ -120,7 +117,7 @@ def download_url(url: str) -> StrByteType | Path: return filepath -common_kwargs = [ +common_kwargs: list[str] = [ "flag_size", "margins", "split_text", @@ -129,8 +126,8 @@ def download_url(url: str) -> StrByteType | Path: "table_regions", "backend", ] -text_kwargs = common_kwargs + ["columns", "edge_tol", "row_tol", "column_tol"] -lattice_kwargs = common_kwargs + [ +text_kwargs: list[str] = common_kwargs + ["columns", "edge_tol", "row_tol", "column_tol"] +lattice_kwargs: list[str] = common_kwargs + [ "process_background", "line_scale", "copy_text", @@ -143,7 +140,7 @@ def download_url(url: str) -> StrByteType | Path: "resolution", "use_fallback", ] -flavor_to_kwargs = { +flavor_to_kwargs: dict[str, list[str]] = { "stream": text_kwargs, "network": text_kwargs, "lattice": lattice_kwargs, @@ -151,53 +148,48 @@ def download_url(url: str) -> StrByteType | Path: } -def validate_input(kwargs, flavor="lattice"): +def validate_input(kwargs: dict[str, Any], flavor="lattice") -> None: """Validates input keyword arguments. Parameters ---------- - kwargs : [type] - [description] + kwargs : dict[str, Any] + Keyword arguments flavor : str, optional - [description], by default "lattice" + Flavor, by default "lattice" Raises ------ ValueError - [description] + Raises a value error when invalid keyword arguments are passed """ - parser_kwargs = flavor_to_kwargs[flavor] + parser_kwargs: list[str] = flavor_to_kwargs[flavor] # s.difference(t): new set with elements in s but not in t - isec = set(kwargs.keys()).difference(set(parser_kwargs)) + isec: set[str] = set(kwargs.keys()).difference(set(parser_kwargs)) if isec: raise ValueError( "{} cannot be used with flavor='{}'".format(",".join(sorted(isec)), flavor) ) -def remove_extra(kwargs, flavor="lattice"): - """Remove extra key - value pairs from a kwargs dictionary. +def remove_extra(kwargs: dict[str, Any], flavor="lattice") -> dict[str, Any]: + """Remove extra key-value pairs from a kwargs dictionary. Parameters ---------- - kwargs : [type] - [description] + kwargs : dict[str, Any] + Keyword arguments flavor : str, optional - [description], by default "lattice" + Flavor, by default "lattice" Returns ------- - [type] - [description] + dict[str, Any] + kwargs dictionary with extra key-value pairs removed. """ - parser_kwargs = flavor_to_kwargs[flavor] - # Avoid "dictionary changed size during iteration" - kwargs_keys = list(kwargs.keys()) - for key in kwargs_keys: - if key not in parser_kwargs: - kwargs.pop(key) - return kwargs + parser_kwargs: list[str] = flavor_to_kwargs[flavor] + return {key: value for key, value in kwargs.items() if key in parser_kwargs} # https://stackoverflow.com/a/22726782 @@ -234,7 +226,7 @@ def __exit__(self, exc_type, exc_value, traceback): pass -def build_file_path_in_temp_dir(filename, extension=None): +def build_file_path_in_temp_dir(filename: str, extension: str = "") -> str: """Generate a new path within a temporary directory. Parameters @@ -250,7 +242,7 @@ def build_file_path_in_temp_dir(filename, extension=None): with TemporaryDirectory() as temp_dir: if extension: filename = filename + extension - path = os.path.join(temp_dir, filename) + path: str = os.path.join(temp_dir, filename) return path @@ -291,36 +283,44 @@ def scale(value: float, factor: float) -> float: return value * factor -def scale_pdf(k, factors): +def scale_pdf( + table_bounding_box: tuple[float, ...], factors: tuple[float, ...] +) -> tuple[float, ...]: """Translate and scale pdf coordinate space to image coordinate space. Parameters ---------- - k : tuple + table_bounding_box : tuple[float, ...] Tuple (x1, y1, x2, y2) representing table bounding box where (x1, y1) -> lt and (x2, y2) -> rb in PDFMiner coordinate space. - factors : tuple + factors : tuple[float, ...] Tuple (scaling_factor_x, scaling_factor_y, pdf_y) where the first two elements are scaling factors and pdf_y is height of pdf. Returns ------- - knew : tuple + tuple[float, ...] Tuple (x1, y1, x2, y2) representing table bounding box where (x1, y1) -> lt and (x2, y2) -> rb in OpenCV coordinate space. """ - x1, y1, x2, y2 = k + x1: float + y1: float + x2: float + y2: float + scaling_factor_x: float + scaling_factor_y: float + pdf_y: float + x1, y1, x2, y2 = table_bounding_box scaling_factor_x, scaling_factor_y, pdf_y = factors x1 = scale(x1, scaling_factor_x) y1 = scale(abs(translate(-pdf_y, y1)), scaling_factor_y) x2 = scale(x2, scaling_factor_x) y2 = scale(abs(translate(-pdf_y, y2)), scaling_factor_y) - knew = (int(x1), int(y1), int(x2), int(y2)) - return knew + return (int(x1), int(y1), int(x2), int(y2)) def scale_image( @@ -361,9 +361,17 @@ def scale_image( - v_segments_new: A new list of scaled vertical segments. - h_segments_new: A new list of scaled horizontal segments. """ + scaling_factor_x: float + scaling_factor_y: float + img_y: float scaling_factor_x, scaling_factor_y, img_y = factors tables_new = {} + x1: float + y1: float + x2: float + y2: float + for k in tables.keys(): x1, y1, x2, y2 = k x1 = scale(x1, scaling_factor_x) @@ -373,8 +381,10 @@ def scale_image( # j_x and j_y are tuples of floats j_x, j_y = zip(*tables[k]) # noqa B905 - j_x_scaled = [scale(j, scaling_factor_x) for j in j_x] - j_y_scaled = [scale(abs(translate(-img_y, j)), scaling_factor_y) for j in j_y] + j_x_scaled: list[float] = [scale(j, scaling_factor_x) for j in j_x] + j_y_scaled: list[float] = [ + scale(abs(translate(-img_y, j)), scaling_factor_y) for j in j_y + ] tables_new[(x1, y1, x2, y2)] = { "joints": list(zip(j_x_scaled, j_y_scaled)) # noqa B905 @@ -814,7 +824,6 @@ def get_index_closest_point( """ n = len(sorted_list) - # If the list is empty, return None if n == 0: return None @@ -867,36 +876,42 @@ def bbox_longer(ba, bb) -> bool: return (ba.x1 - ba.x0) >= (bb.x1 - bb.x0) -def merge_close_lines(ar, line_tol=2): +def merge_close_lines(array: list[float], line_tol: int = 2) -> list[float]: """Merge lines which are within a tolerance. + Merges close floating-point values within a specified tolerance. + By calculating a moving mean, based on their x or y axis projections. + Assumes the input list of numbers is sorted. + Parameters ---------- - ar : list + array : list[float] + List of floats. line_tol : int, optional (default: 2) + Line tolerance. Returns ------- ret : list """ - ret = [] - for a in ar: + ret: list[float] = [] + for element in array: if not ret: - ret.append(a) + ret.append(element) else: - temp = ret[-1] - if math.isclose(temp, a, abs_tol=line_tol): - temp = (temp + a) / 2.0 + temp: float = ret[-1] + if math.isclose(temp, element, abs_tol=line_tol): + temp = (temp + element) / 2.0 ret[-1] = temp else: - ret.append(a) + ret.append(element) return ret -def text_strip(text, strip=""): +def text_strip(text: str, strip: str = "") -> str: """Strip any characters in `strip` that are present in `text`. Parameters @@ -908,15 +923,14 @@ def text_strip(text, strip=""): Returns ------- - stripped : str + str + The processed string. """ - if not strip: - return text - - stripped = re.sub( - rf"[{''.join(map(re.escape, strip))}]", "", text, flags=re.UNICODE + return ( + re.sub(rf"[{''.join(map(re.escape, strip))}]", "", text, flags=re.UNICODE) + if strip + else text ) - return stripped # TODO: combine the following functions into a TextProcessor class which @@ -1138,23 +1152,23 @@ def _group_and_process_chars( chars_list = list(chars) # Convert the iterator to a list to reuse it if flag_size: - grouped_chars.append( - ( - key[0], - key[1], - flag_font_size( - [t[2] for t in chars_list], direction, strip_text=strip_text - ), - ) - ) + grouped_chars.append(( + key[0], + key[1], + flag_font_size( + [t[2] for t in chars_list], direction, strip_text=strip_text + ), + )) else: gchars = [] for t in chars_list: gchars.append(t[2].get_text()) - grouped_chars.append( - (key[0], key[1], text_strip("".join(gchars), strip_text)) - ) + grouped_chars.append(( + key[0], + key[1], + text_strip("".join(gchars), strip_text), + )) return grouped_chars @@ -1312,12 +1326,12 @@ def compute_accuracy(error_weights): return score -def compute_whitespace(d: list[list[str]]) -> float: +def compute_whitespace(table_data: list[list[str]]) -> float: """Calculates the percentage of empty strings in a two-dimensional list. Parameters ---------- - d : list + table_data : list[list[str]] A two-dimensional list (list of lists) containing strings. Returns @@ -1325,29 +1339,17 @@ def compute_whitespace(d: list[list[str]]) -> float: whitespace : float Percentage of empty cells. """ - # Initialize the count of empty strings - whitespace = 0 - total_elements = 0 # Keep track of the total number of elements - - # Iterate through each row in the 2D list - for i in d: - # Only process if the row is a list - if isinstance(i, list): - total_elements += len(i) # Count the number of elements in this row - # Iterate through each element in the row - for j in i: - # Check if the element is an empty string after stripping whitespace - if isinstance(j, str) and j.strip() == "": - whitespace += 1 # Increment the count of empty strings - - # Avoid division by zero - if total_elements == 0: - return 0.0 # If there are no elements, return 0% - - # Calculate the percentage of empty strings - whitespace_percentage = 100 * (whitespace / total_elements) - - return whitespace_percentage + total_elements: int = sum( + len(row) for row in table_data if isinstance(row, list) if row + ) + whitespace: int = sum( + 1 + for row in table_data + if isinstance(row, list) + for element in row + if element.strip() == "" + ) + return 0.0 if total_elements == 0 else 100 * (whitespace / total_elements) def get_page_layout( diff --git a/pyproject.toml b/pyproject.toml index 006efdae..58290311 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -134,6 +134,11 @@ disallow_subclassing_any = true disallow_untyped_decorators = true disallow_any_generics = true +[tool.uv] +dev-dependencies = [ + "pytest-cov>=5.0.0", +] + # These next few are various gradations of forcing use of type annotations # disallow_untyped_calls = true # disallow_incomplete_defs = true diff --git a/tests/test_utils.py b/tests/test_utils.py index 85ae6005..c75cdaa0 100644 --- a/tests/test_utils.py +++ b/tests/test_utils.py @@ -2,6 +2,7 @@ import os +import pytest from pdfminer.converter import PDFPageAggregator from pdfminer.layout import LAParams from pdfminer.layout import LTTextBoxHorizontal @@ -9,7 +10,7 @@ from pdfminer.pdfinterp import PDFResourceManager from pdfminer.pdfpage import PDFPage -from camelot.utils import bbox_intersection_area +from camelot.utils import bbox_intersection_area, compute_whitespace, merge_close_lines def get_text_from_pdf(filename): @@ -43,3 +44,54 @@ def test_bbox_intersection_text(testdir): pdftextelement2 = get_text_from_pdf(filename2) assert bbox_intersection_area(pdftextelement1, pdftextelement2) == 0.0 + + +@pytest.mark.parametrize( + "table_data, expected", + [ + ([], 0.0), + ([[]], 0.0), + ([[""]], 100.0), + ([["a", "b", "c"], ["d", "e", "f"]], 0.0), + ([["", "", ""], ["", ""]], 100.0), + ([["a", "", "c"], ["", "e", ""]], 50.0), + ([["", "", ""]], 100.0), + ([["a", "b", "c"]], 0.0), + ([["a"]], 0.0), + ([[""]], 100.0), + (["not a list", ["a", "b"], ["", ""]], 50.0), + ([["a", "", "42"], ["", "None", ""]], 50.0), + ] +) +def test_compute_whitespace(table_data: list[list[str]], expected: float) -> None: + result: float = compute_whitespace(table_data) + assert result == pytest.approx(expected) + + +def test_merge_empty_list() -> None: + """Test merging an empty list.""" + assert merge_close_lines([]) == [] + +def test_merge_single_element() -> None: + """Test merging a single-element list.""" + assert merge_close_lines([5.0]) == pytest.approx([5.0]) + +def test_merge_no_close_elements() -> None: + """Test a list with no close elements.""" + assert merge_close_lines([1.0, 10.0, 20.0], line_tol=2) == pytest.approx([1.0, 10.0, 20.0]) + +def test_merge_all_close_elements() -> None: + """Test a list where all elements are close.""" + assert merge_close_lines([1.0, 2.0, 3.0], line_tol=2) == pytest.approx([2.25]) + +def test_merge_some_close_elements() -> None: + """Test a list where some elements are close.""" + assert merge_close_lines([1.0, 2.0, 5.0, 7.0], line_tol=2) == pytest.approx([1.5, 6.0]) + +def test_merge_edge_case_tolerance_boundary() -> None: + """Test merging elements exactly on the tolerance boundary.""" + assert merge_close_lines([1.0, 3.0, 5.0], line_tol=2) == pytest.approx([2.0, 5.0]) + +def test_merge_negative_numbers(): + """Test merging with negative numbers.""" + assert merge_close_lines([-10.0, -8.0, 1.0, 3.0], line_tol=2) == pytest.approx([-9.0, 2.0]) diff --git a/uv.lock b/uv.lock index e65ae0e4..57306eb9 100644 --- a/uv.lock +++ b/uv.lock @@ -1,9 +1,12 @@ version = 1 -requires-python = ">=3.9" +requires-python = ">=3.8" resolution-markers = [ - "python_full_version < '3.10' and platform_machine == 'arm64' and platform_system == 'Darwin'", - "python_full_version < '3.10' and platform_machine == 'aarch64' and platform_system == 'Linux'", - "(python_full_version < '3.10' and platform_machine != 'aarch64' and platform_machine != 'arm64') or (python_full_version < '3.10' and platform_machine == 'aarch64' and platform_system != 'Linux') or (python_full_version < '3.10' and platform_machine == 'arm64' and platform_system != 'Darwin')", + "python_full_version < '3.9' and platform_machine == 'arm64' and platform_system == 'Darwin'", + "python_full_version < '3.9' and 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