TADfind #940
Description
Hi
When I use hicexplore for TAD calling, showed this error, how I can fix it? Thanks!
INFO:hicexplorer.hicFindTADs:removing diagonal values
INFO:hicexplorer.hicFindTADs:Computing z-score matrix...
INFO:hicexplorer.hicFindTADs:Computing TAD-separation scores...
INFO:hicexplorer.hicFindTADs:computing spectrum for window sizes between 10 (100000 bp)and 40 (400000 bp) at the following window sizes 2 [100000, 120000, 156568, 203923, 260000, 323606, 393938]
INFO:hicexplorer.hicFindTADs:Using 10 processors
Traceback (most recent call last):
File "/risapps/rhel8/miniforge3/24.5.0-0/envs/hicexplorer-3.7.6/bin/hicFindTADs", line 7, in
main()
File "/risapps/rhel8/miniforge3/24.5.0-0/envs/hicexplorer-3.7.6/lib/python3.12/site-packages/hicexplorer/hicFindTADs.py", line 1357, in main
ft.find_boundaries()
File "/risapps/rhel8/miniforge3/24.5.0-0/envs/hicexplorer-3.7.6/lib/python3.12/site-packages/hicexplorer/hicFindTADs.py", line 1264, in find_boundaries
min_idx, delta = HicFindTads.find_consensus_minima(self.bedgraph_matrix['matrix'], lookahead=lookahead,
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/risapps/rhel8/miniforge3/24.5.0-0/envs/hicexplorer-3.7.6/lib/python3.12/site-packages/hicexplorer/hicFindTADs.py", line 629, in find_consensus_minima
_max, _min = HicFindTads.peakdetect(tad_score_matrix_avg, lookahead=lookahead, chrom=chrom)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/risapps/rhel8/miniforge3/24.5.0-0/envs/hicexplorer-3.7.6/lib/python3.12/site-packages/hicexplorer/hicFindTADs.py", line 510, in peakdetect
min_y, max_y = np.Inf, -np.Inf
^^^^^^
File "/home/mxue/.local/lib/python3.12/site-packages/numpy/init.py", line 400, in getattr
raise AttributeError(
AttributeError: np.Inf was removed in the NumPy 2.0 release. Use np.inf instead.