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added pybigtools to baseimage
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docker-baseimage/Dockerfile

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@@ -57,7 +57,7 @@ RUN cd /tmp && mkdir -p $CONDA_DIR && \
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wget "https://github.com/conda-forge/miniforge/releases/download/24.3.0-0/Mambaforge-24.3.0-0-Linux-x86_64.sh" && \
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bash Mambaforge-24.3.0-0-Linux-x86_64.sh -f -b -p $CONDA_DIR && \
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rm -f Mambaforge-24.3.0-0-Linux-x86_64.sh && \
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$CONDA_DIR/bin/mamba install -y --channel conda-forge --channel bioconda bcftools==1.20 htslib==1.20 samtools==1.20 pandas==2.0.2 bedtools=2.31 pybedtools==0.9.0 openpyxl==3.1.2 scipy==1.11.4 cython cyvcf2==0.30.28 pysam==0.22.1 statsmodels pyranges==0.0.129 pybigwig globus-cli nextflow nf-core SQLAlchemy biotite pyodbc && \
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$CONDA_DIR/bin/mamba install -y --channel conda-forge --channel bioconda bcftools==1.20 htslib==1.20 samtools==1.20 pandas==2.0.2 bedtools=2.31 pybedtools==0.9.0 openpyxl==3.1.2 scipy==1.11.4 cython cyvcf2==0.30.28 pysam==0.22.1 statsmodels pyranges==0.0.129 pybigwig globus-cli nextflow nf-core SQLAlchemy biotite pyodbc pybigtools && \
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$CONDA_DIR/bin/conda clean -y --all && \
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ln -s /opt/conda/bin/* /usr/local/bin/
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