additional changes after CI-formatting

Author: guj

source/utils/profiler/scripts/parseMe.py

@@ -1,30 +1,31 @@
 #!/usr/bin/env python3
 
-import argparse, textwrap
+import argparse
+import textwrap
 import os
 
 parser = argparse.ArgumentParser(
     description="ADIOS json file parser step 2 (step 1 is use compare.sh to collect properties from json)"
 )
 
 TAGS = {
-    "input_dir": "dataDir",  ## key name for input direcory is "dataDir"
+    "input_dir": "dataDir",  # key name for input direcory is "dataDir"
     "rank": "whichRank",  ##
     "out": "plotPrefix",  ##
     "showfig": "showFig",  ##
-    "attr": "jsonAttr",  ## key refer to specific json attr
-    "zero": "zeroIf",  ## key refer to a min number to be treated as 0. Spot the first rank with this value, and only plot up to this rank.
+    "attr": "jsonAttr",  # key refer to specific json attr
+    "zero": "zeroIf",  # key refer to a min number to be treated as 0. Spot the first rank with this value, and only plot up to this rank.
     "level": "levelAxis",
 }
 
 TAGS_DEFAULT = {
-    "input_dir": "outs/",  ## key name for input direcory defaults to "outs/"
+    "input_dir": "outs/",  # key name for input direcory defaults to "outs/"
     "rank": 0,  ##
     "out": "plot",  ##
     "showfig": "False",  ##
-    "attr": "ES",  ## default json attr to look at is ES
-    "zero": "0.000001",  ## ignore if smaller than
-    "level": "False",  ## whether left/right axises (if both exist) should display same range
+    "attr": "ES",  # default json attr to look at is ES
+    "zero": "0.000001",  # ignore if smaller than
+    "level": "False",  # whether left/right axises (if both exist) should display same range
 }
 
 parser.add_argument(
@@ -115,12 +116,3 @@ def parse_vars(items):
     parser.error(f"showFig must be 'True' or 'False', got '{command_options[TAGS['level']]}'")
 command_options[TAGS["showfig"]] = showFig_val == "true"
 
-# command_options[TAGS["level"]] = eval(command_options[TAGS["level"]])
-
-# valid_keys = set(TAGS.values())
-# for key in command_options:
-#    if key not in valid_keys:
-#        parser.warn(f"Invalid option key: '{key}'. Valid keys are: {', '.join(valid_keys)}")
-####     allow extra options      ####
-
-# print (command_options)

source/utils/profiler/scripts/plotCall.py

@@ -35,7 +35,7 @@ def summarizeFile(inputFile):
         with open(inputFile, "r") as f:
             data = csv.reader(f, delimiter=",", quotechar="|")
             data1 = [float(row[0]) for row in data if row]  # Handle empty rows
-            return int(data1[0]) if data1 else 0  ## num of calls are the same for all ranks
+            return int(data1[0]) if data1 else 0  # num of calls are the same for all ranks
     except (FileNotFoundError, IndexError, ValueError) as e:
         print(f"Warning: Could not process {inputFile}: {e}")
         return 0

source/utils/profiler/scripts/plotRanks.py

@@ -3,7 +3,8 @@
 import matplotlib.pyplot as plt
 import numpy as np
 import csv
-import sys, os
+import sys
+import os
 import parseMe
 import common
 
@@ -21,7 +22,7 @@ def processFile(inputFile, ax, color, tag):
     if idx > 10:
         ax.plot(data1[0:idx], "--o", color=color)
         ax.set_xticks([0, data1.size - 1])
-        # ax.set_xticks([]) ## no x ticks
+        # ax.set_xticks([]) #  no x ticks
     else:
         if color == "r":
             ax.plot(range(idx), data1[0:idx], "--o", color=color)
@@ -57,13 +58,13 @@ def processFile(inputFile, ax, color, tag):
     elif len(parseMe.args.ioTypes) == 2:
         ax2 = ax1.twinx()
 
-    ## logscale and ticklabel_format cannot be present together. python error
+    # note: logscale and ticklabel_format cannot be present together. python error
     logScaleAxis = ""
     if "logScale" in parseMe.command_options:
         logScaleAxis = parseMe.command_options["logScale"]
 
     jsonAttrStr = parseMe.command_options[parseMe.TAGS["attr"]]
-    whichKind = "secs"  ## or 'nCalls'or 'MB'
+    whichKind = "secs"  #  or 'nCalls'or 'MB'
     if "whichKind" in parseMe.command_options:
         whichKind = "MB"
     for i in range(0, len(parseMe.args.ioTypes)):