Repositories list

• profiling-gprof

  Public
  Generated files from profiling with GProf on CI

  HTML

  •0•0•0•0•Updated Oct 30, 2025Oct 30, 2025

• Chaste

  Public
  Chaste - Cancer Heart And Soft Tissue Environment - main public repository.

  c-plus-pluscomputational-biologyelectrophysiology+ 7mathematical-modellinghpc-applicationscancer-researchmathematical-biologydevelopmental-biologycell-basedphysiology

  C++

  •

  Other

  •67•141•65•8•Updated Oct 30, 2025Oct 30, 2025

• memory-testing

  Public
  Generated files from the memory testing CI

  HTML

  •0•0•0•0•Updated Oct 30, 2025Oct 30, 2025

• doxygen-latest

  Public
  GitHub pages site containing doxygen generated from the latest commit on develop

  HTML

  •0•0•0•0•Updated Oct 28, 2025Oct 28, 2025

• chaste-docker

  Public
  Docker images for Chaste

  windowsmacoslinux+ 6dockerdockerfilesimulationdocker-containerdocker-imagechaste

  Dockerfile

  •

  MIT License

  •10•11•8•1•Updated Oct 27, 2025Oct 27, 2025

• chaste-codegen-sbml

  Public
  Chaste C++ code generation from SBML

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•10•1•Updated Oct 27, 2025Oct 27, 2025

• chaste-workshop-materials-2025

  Public
  Materials for the 2025 Chaste workshop in Nottingham

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Oct 15, 2025Oct 15, 2025

• OpenVtMonolayer

  Public
  Project for the Open VT Monolayer exemplar.

  C++

  •0•0•0•0•Updated Oct 12, 2025Oct 12, 2025

• OpenVT

  Public
  OpenVT reference model implementations in Chaste

  C++

  •

  Other

  •0•0•0•0•Updated Oct 8, 2025Oct 8, 2025

• PerMedCoE

  Public
  PerMedCoE community benchmarking code for the Chaste project

  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •0•2•0•0•Updated Sep 30, 2025Sep 30, 2025

• OpenVtPersistentRandomWalk

  Public
  Repo for the Persistent Random walk exemplar from the Open VT project

  C++

  •0•1•1•0•Updated Aug 30, 2025Aug 30, 2025

• chaste-smb-workshop-materials-2025

  Public
  Materials for the 2025 Chaste tutorial at the Open VT workshop at the 2025 SMB Meeting

  0•0•0•0•Updated Aug 4, 2025Aug 4, 2025

• dependency-modules

  Public
  Environment modules for Chaste dependencies

  Shell

  •

  Other

  •0•1•5•0•Updated Jul 22, 2025Jul 22, 2025

• gpu-benchmark-2024

  Public
  Cuda

  •0•0•0•0•Updated Jun 3, 2025Jun 3, 2025

• CellBasedComparison2017

  Public
  Code for the 2017 Cell Based Comparison paper https://doi.org/10.1371/journal.pcbi.1005387

  paper-tutorialmigrated-from-svn

  C++

  •0•0•0•0•Updated May 12, 2025May 12, 2025

• ApPredict

  Public
  Cardiac Action Potential Prediction (ApPredict) under drug-induced block of ion channels. This is a Chaste extension/bolt-on project.

  drug-discoveryelectrophysiologymathematical-modelling+ 5biophysicscardiacion-channelchastedrug-safety

  C++

  •

  Other

  •4•7•2•0•Updated Apr 23, 2025Apr 23, 2025

• cellml

  Public
  Some copies of cellml.org electrophysiology models with metadata annotations for use with Chaste, ApPredict and WebLab

  5•7•1•0•Updated Feb 25, 2025Feb 25, 2025

• doxygen-releases

  Public
  GitHub pages site containing static doxygen for individual releases

  HTML

  •0•0•0•0•Updated Feb 3, 2025Feb 3, 2025

• ImmersedBoundaryWorkshop

  Public
  Chaste / Oxford 2023 - Immersed Boundary Workshop Code

  C++

  •0•0•0•0•Updated Jan 9, 2025Jan 9, 2025

• IntroToChasteCpp2025

  Public
  An introduction to using Chaste from C++ for the 2025 Nottingham Workshop

  C++

  •2•0•0•0•Updated Jan 9, 2025Jan 9, 2025

• PyChaste

  Public
  A Python Wrapper for Chaste

  C++

  •

  Other

  •0•3•6•2•Updated Jan 8, 2025Jan 8, 2025

• cppwg

  Public
  An automatic Python wrapper generator for C++ code.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •9•49•7•0•Updated Nov 26, 2024Nov 26, 2024

• project_FunctionalCuration

  Public
  Git conversion of old SVN user project FunctionalCuration

  C++

  •0•0•0•0•Updated Jul 8, 2024Jul 8, 2024

• project_Wisc2013

  Public
  Git conversion of old SVN user project Wisc2013

  C++

  •0•0•0•0•Updated Jul 8, 2024Jul 8, 2024

• project_CardiacEpVerification

  Public
  Git conversion of old SVN user project CardiacEpVerification

  C++

  •0•0•0•0•Updated Jul 5, 2024Jul 5, 2024

• IntroToChasteCpp

  Public
  An introduction to using Chaste from C++

  C++

  •2•1•1•0•Updated May 9, 2024May 9, 2024

• project_DanieleM

  Public
  Git conversion of old SVN user project DanieleM

  C++

  •0•0•0•0•Updated May 2, 2024May 2, 2024

• project_PlosOne_mRNA

  Public
  Git conversion of old SVN user project PlosOne_mRNA

  MATLAB

  •0•0•0•0•Updated May 2, 2024May 2, 2024

• project_Plos2013

  Public
  Git conversion of old SVN user project Plos2013

  C++

  •0•0•0•0•Updated May 2, 2024May 2, 2024

• project_Plos2012

  Public
  Git conversion of old SVN user project Plos2012

  C++

  •0•0•0•0•Updated May 2, 2024May 2, 2024