Repositories list

• ECDC-Mathematical-Models

  Public
  R

  •

  European Union Public License 1.2

  •0•1•0•0•Updated Oct 27, 2025Oct 27, 2025

• Respiratory_viruses_weekly_data

  Public
  European Union Public License 1.2

  •2•15•3•0•Updated Oct 24, 2025Oct 24, 2025

• HyFive

  Public
  Hand Hygiene monitoring application

  C#

  •

  MIT License

  •0•0•0•0•Updated Oct 17, 2025Oct 17, 2025

• hivModelling

  Public
  R

  •

  European Union Public License 1.2

  •1•0•0•0•Updated Sep 16, 2025Sep 16, 2025

• hivEstInfTime

  Public
  R

  •

  European Union Public License 1.2

  •1•0•0•0•Updated Sep 16, 2025Sep 16, 2025

• hivPlatform

  Public
  JavaScript

  •

  European Union Public License 1.2

  •1•0•0•0•Updated Sep 12, 2025Sep 12, 2025

• epc_cli

  Public
  Command-line interface for automating and managing epidemiological and WGS data submissions to the EpiPulse Cases platform, with support for configuration, validation, and approval workflows.

  Python

  •

  European Union Public License 1.2

  •0•2•0•0•Updated Aug 21, 2025Aug 21, 2025

• hivEstimatesAccuracy

  Public
  R

  •

  European Union Public License 1.2

  •0•0•0•0•Updated Jul 24, 2025Jul 24, 2025

• hivEstimatesAccuracyUI

  Public
  R

  •

  European Union Public License 1.2

  •0•0•0•0•Updated Jul 24, 2025Jul 24, 2025

• hivPlatform_deprecated

  Public
  R

  •

  European Union Public License 1.2

  •0•0•0•0•Updated Jul 24, 2025Jul 24, 2025

• hivEstimatesAccuracy2

  Public
  R

  •

  European Union Public License 1.2

  •0•0•0•0•Updated Jul 24, 2025Jul 24, 2025

• EpiReport

  Public
  ECDC in collaboration with Epiconcept developed an R package to create epidemiological reports

  HTML

  •

  European Union Public License 1.2

  •4•11•0•1•Updated Jul 24, 2025Jul 24, 2025

• PooledPrevalence

  Public
  A set of tools to help design a laboratory based prevalence study harnessing the pooling of laboratory samples to increase resource efficiency.

  R

  •

  European Union Public License 1.2

  •2•4•5•0•Updated Jul 24, 2025Jul 24, 2025

• EcdcSupportSnippets

  Public
  Development of various support R code snippets and packages for use for analysis and modelling purposes.

  R

  •

  European Union Public License 1.2

  •2•7•9•1•Updated Jul 24, 2025Jul 24, 2025

• EcdcColors

  Public
  Development of an R package for using colour palettes following March 2018 ECDC guidelines for presentation of surveillance data

  R

  •

  European Union Public License 1.2

  •5•7•0•0•Updated Jul 24, 2025Jul 24, 2025

• IPDForecasting

  Public
  Forecasts of invasive pneumococcal disease (IPD). Dynamic regression model based on demography, vaccination coverage, childcare patterns and incidence of IPD and influenza.

  R

  •

  European Union Public License 1.2

  •0•1•1•0•Updated Jul 24, 2025Jul 24, 2025

• HerpesZosterModel

  Public
  Development of an R package for Herpes Zoster modeling

  R

  •

  European Union Public License 1.2

  •1•0•1•0•Updated Jul 24, 2025Jul 24, 2025

• MixtureOfExperts

  Public
  A flexible mixture of experts framework, calibrated with expectation maximisation. Options for mixtures of Gaussians, regression models etc.

  R

  •

  European Union Public License 1.2

  •1•1•0•0•Updated Jul 24, 2025Jul 24, 2025

• EpiSignalDetection

  Public
  ECDC in collaboration with Epiconcept developed an R package for monitoring infectious disease surveillance data

  HTML

  •

  European Union Public License 1.2

  •5•17•1•0•Updated Jul 24, 2025Jul 24, 2025

• MonthlyMeaslesRubella

  Public
  Development of an R package for production of the monthly measles and rubella surveillance report

  European Union Public License 1.2

  •0•1•0•0•Updated Jul 24, 2025Jul 24, 2025

• ECDC-AI-Outlook-Extender

  Public
  ECDC AI Outlook Extender

  C#

  •

  European Union Public License 1.2

  •0•0•0•0•Updated Jul 24, 2025Jul 24, 2025

• Epiphany

  Public
  HTML

  •

  European Union Public License 1.2

  •0•1•0•0•Updated Jul 24, 2025Jul 24, 2025

• epitweetr

  Public
  ECDC Early warning tool using Twitter data

  machine-learningrtwitter+ 5sparklucenesignal-detectionearly-warning-systemsepidemic-surveillance

  Scala

  •

  European Union Public License 1.2

  •14•56•6•0•Updated Jul 24, 2025Jul 24, 2025

• BackendCovidApp

  Public
  The backend to the COVID-19 RShiny app (github.com/EU-ECDC/RShinyCovidApp)

  R

  •

  European Union Public License 1.2

  •2•1•0•1•Updated Jul 18, 2025Jul 18, 2025

• RShinyCovidApp

  Public
  The RShiny app is designed to make three features accessible to the user: 1) Forecasts: Current and previous four-week ahead forecasts of the number of cases in each region (and age group when available), 2) Predictors: The risks of secondary transmission and importations estimated by the model, and 3) Scenarios: The impact of changes in transmi…

  R

  •

  European Union Public License 1.2

  •0•0•0•0•Updated Jul 18, 2025Jul 18, 2025

• COVID-19_weekly-data

  Public
  R

  •

  European Union Public License 1.2

  •0•0•1•0•Updated Jul 18, 2025Jul 18, 2025

• JIACRA2019-2021

  Public
  Fourth joint inter-agency report on integrated analysis of antimicrobial agent consumption and occurrence of antimicrobial resistance in bacteria from humans and food-producing animals in the EU/EEA

  R

  •

  European Union Public License 1.2

  •0•1•0•0•Updated Jul 18, 2025Jul 18, 2025

• COVID19SocialPatterns

  Public
  R

  •

  European Union Public License 1.2

  •1•0•0•0•Updated Apr 4, 2025Apr 4, 2025