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@ICI3D International Clinics on Infectious Disease Dynamics and Data (ICI3D) Program

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    19 repositories

    • DAIDD

      Public
      Faculty repo and website for DAIDD. The master branch is private and the pages branch is public.
      Makefile
      •
      Other
      •0•0•1•0•Updated Oct 30, 2025Oct 30, 2025

    • ICI3D.github.io

      Public
      International Clinics on Infectious Disease Dynamics and Data (ICI3D) Program
      JavaScript
      •
      Other
      •15•3•4•0•Updated Oct 30, 2025Oct 30, 2025

    • RTutorials

      Public
      ICI3D R tutorials
      R
      •47•16•4•0•Updated Aug 4, 2025Aug 4, 2025

    • LatexTemplates

      Public
      TeX
      •
      Other
      •0•0•1•0•Updated Jul 28, 2025Jul 28, 2025

    • MMED

      Public
      Workshop repo
      R
      •
      Other
      •0•0•5•0•Updated Jun 27, 2025Jun 27, 2025

    • ici3d-pkg

      Public
      R package for DAIDD and MMED clinics
      R
      •2•3•14•0•Updated Jun 26, 2024Jun 26, 2024

    • Sandbox

      Public
      ICI3D sandbox repository for learning Git
      R
      •73•1•1•1•Updated Jun 24, 2024Jun 24, 2024

    • jekyll-theme-ici3d

      Public
      Jekyll theme for ICI3D sites
      JavaScript
      •
      MIT License
      •0•0•2•0•Updated Jul 10, 2023Jul 10, 2023

    • useclinicutils

      Public
      Utilities for useclinic-generated packages
      R
      •0•0•0•0•Updated Dec 27, 2022Dec 27, 2022

    • useclinic

      Public
      Specialization of UseThis for ICI3D
      R
      •
      Other
      •0•2•2•0•Updated Dec 25, 2022Dec 25, 2022

    • .github

      Public
      International Clinics on Infectious Disease Dynamics & Data (ICI3D)
      0•0•3•0•Updated Dec 12, 2022Dec 12, 2022

    • modelTaxonomy_SI

      Public
      Supplement for Pulliam et al. Compartmental Models for Infectious Disease Dynamics: a taxonomy
      R
      •0•0•1•0•Updated Jul 4, 2022Jul 4, 2022

    • trans_intervals

      Public
      MMED 2021 project on transmission intervals
      R
      •
      GNU General Public License v3.0
      •0•1•1•0•Updated Jul 9, 2021Jul 9, 2021

    • stochasticInvasion

      Public
      R
      •
      GNU General Public License v3.0
      •1•1•1•0•Updated Jul 8, 2021Jul 8, 2021

    • lectureCode

      Public
      Code to produce figures used in various lectures
      R
      •2•0•1•0•Updated Jul 27, 2019Jul 27, 2019

    • Ebola

      Public
      Public repository for Ebola collaboration code
      Liquid
      •1•0•0•0•Updated Dec 7, 2016Dec 7, 2016

    • SempaetalAJE-00426-2015

      Public
      Code repository for Sempa et al. ('Reevaluating Cumulative HIV-1 viral load as a Prognostic Predictor: Predicting Opportunistic Infection Incidence and Mortality in a Ugandan cohort')
      R
      •0•0•1•0•Updated Oct 27, 2015Oct 27, 2015

    • ebola-forecast

      Public
      R
      •1•0•1•0•Updated Jan 19, 2015Jan 19, 2015

    • CDC-Ebola-model

      Public
      Reimplementation of the Meltzer model
      R
      •1•0•1•0•Updated Dec 10, 2014Dec 10, 2014