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    21 repositories

    • embryo

      Public
      Spatiotemporal Metabolic Atlas of Mammalian Organogenesis
      TeX
      •0•0•0•0•Updated Jul 18, 2025Jul 18, 2025

    • IMCpaper

      Public
      A clinically relevant spatial single-cell landscape of pancreatic cancer
      HTML
      •0•0•0•0•Updated Mar 31, 2025Mar 31, 2025

    • twist2

      Public
      TWIST2 high expression defines a new subtype of B-cell precursor acute lymphoblastic leukemia
      CSS
      •0•0•0•0•Updated Mar 31, 2025Mar 31, 2025

    • sdc1_mac

      Public
      SDC1 Macrophage
      JavaScript
      •0•0•0•0•Updated Mar 18, 2025Mar 18, 2025

    • healthman

      Public
      code for "A comparative cohort study of post-COVID-19 conditions based on 23,838 individuals’ physical examination records in China"
      Jupyter Notebook
      •
      Apache License 2.0
      •1•1•0•0•Updated Jul 1, 2024Jul 1, 2024

    • BioInstaller

      Public
      A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform
      installerinstaller-scriptbioinformatics-analysisngs-analysis
      R
      •
      Other
      •12•57•12•0•Updated Jan 8, 2023Jan 8, 2023

    • hyperion

      Public
      A Toolkit for Imaging Mass Cytometry™ (IMC™) with the Hyperion™ Imaging System Data
      R
      •0•0•0•0•Updated Nov 10, 2022Nov 10, 2022

    • imctoolkits

      Public
      A Toolkit for Imaging Mass Cytometry™ (IMC™) with the Hyperion™ Imaging System Data
      R
      •0•0•0•0•Updated Aug 24, 2022Aug 24, 2022

    • CytoTree

      Public
      A Toolkit for Construct Tree-shaped Trajectory for Flow and Mass Cytometry data
      R
      •8•28•9•0•Updated Nov 8, 2020Nov 8, 2020

    • CytoTree-dataset

      Public
      Datasets and code for CytoTree
      HTML
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Oct 31, 2020Oct 31, 2020

    • flowSpy-dataset

      Public
      Dataset of flowSpy
      HTML
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Jul 9, 2020Jul 9, 2020

    • EWASpaper

      Public
      Leveraging biological and statistical covariates improves the detection power in epigenome-wide association testing
      R
      •
      MIT License
      •1•1•0•0•Updated Feb 29, 2020Feb 29, 2020

    • GSEA-MSigDB

      Public
      GSEA-MSigDB
      0•0•0•0•Updated Dec 27, 2019Dec 27, 2019

    • configr

      Public
      R
      •
      Other
      •0•0•0•0•Updated Nov 19, 2019Nov 19, 2019

    • gvmap

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Nov 19, 2019Nov 19, 2019

    • ewas

      Public
      0•0•0•0•Updated Jul 26, 2019Jul 26, 2019

    • BioInstaller-docker-repo

      Public
      Docker image repo
      Dockerfile
      •0•0•0•0•Updated May 15, 2019May 15, 2019

    • delfi_scripts

      Public
      R
      •45•0•0•0•Updated Apr 18, 2019Apr 18, 2019

    • ngstk

      Public
      A toolkit developed by JhuangLab members to facilitate the analysis of next-generation sequencing (NGS) data.
      R
      •
      Other
      •5•19•0•0•Updated Nov 20, 2018Nov 20, 2018

    • iseq

      Public
      An integrated analysis toolkit and pipeline for Next-Generation Sequencing (NGS) panel sequencing data
      Python
      •
      Apache License 2.0
      •1•14•0•0•Updated Aug 16, 2018Aug 16, 2018

    • qap

      Public
      quasispecies analysis package
      Roff
      •
      GNU General Public License v3.0
      •4•0•0•0•Updated Jan 5, 2018Jan 5, 2018