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40 repositories

teal.builder.checks
Public
R
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GNU General Public License v2.0
•0•2•0•0•Updated Jun 3, 2025Jun 3, 2025
sharp-bounds-for-continuous-treatment-effects
Public
Snapshot of the implementation used to generate figures and numerical results from the paper "Sharp Bounds for Continuous-Valued Treatment Effects with Unobserved Confounders", Baitairian et al. (2024).
sensitivity-analysis causal-inference confounder continuous-treatment average-potential-outcome
R
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Other
•0•0•0•0•Updated May 28, 2025May 28, 2025
PMX-CovEval
Public
AMPL
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MIT License
•0•1•0•0•Updated May 28, 2025May 28, 2025
prodigyprotein
Public
Protein Diversification and Generation through Yielded mutations (Prodigy) Protein is an end-to-end platform for plug and play protein engineering
zero-shot protein-engineering protein-language-models
Python
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Other
•0•0•0•0•Updated May 22, 2025May 22, 2025
CImpact
Public
Causal inference library for timeseries analysis
machine-learning ai time-series solutions impact causal-inference advanced-analytics
Python
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Other
•1•12•2•1•Updated May 20, 2025May 20, 2025
risk.assessr
Public
Define quality variables for evaluating the risk associated with R packages.
R
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GNU General Public License v2.0
•2•28•1•0•Updated May 20, 2025May 20, 2025
CLM-LER
Public
Train, and fine-tune transformer models on huggingface for tasks involving electronic health records (EHR) and laboratory data
bert clinical-nlp ehr-data
Python
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Other
•0•2•0•0•Updated May 13, 2025May 13, 2025
enact-pipeline
Public
Repository for ENACT pipeline for end-to-end analysis of Visium HD data
Jupyter Notebook
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Other
•12•49•4•2•Updated May 13, 2025May 13, 2025
RiboNN
Public
RiboNN: predicting translation efficiencies from mRNA sequences
deep-learning mrna-translation-efficiency
Python
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Other
•2•10•0•0•Updated May 9, 2025May 9, 2025
MIPHEI-ViT
Public
Jupyter Notebook
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Other
•3•7•0•0•Updated May 8, 2025May 8, 2025
causal_survival_analysis
Public
Causal survival analysis
TeX
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GNU General Public License v3.0
•0•1•0•0•Updated May 7, 2025May 7, 2025
MolQuery
Public
Python
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Other
•0•0•0•0•Updated Apr 16, 2025Apr 16, 2025
CAP-PLM
Public
Jupyter Notebook
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Other
•1•0•0•0•Updated Apr 4, 2025Apr 4, 2025
Alien
Public
Python
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Other
•2•13•0•0•Updated Apr 1, 2025Apr 1, 2025
PyEvoCell
Public
Python
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Other
•0•3•0•0•Updated Mar 31, 2025Mar 31, 2025
IDD-papers-generative-applicability-domains
Public
Repository for the code associated with the paper Impact of applicability domains by Maxime Langevin et al.
cc-f40ccl2041
Jupyter Notebook
•4•12•1•0•Updated Feb 19, 2025Feb 19, 2025
IDD-papers-avoiding_failure_modes
Public
Repository for the code associated with the paper Avoiding Failure Modes by Maxime Langevin et al.
Jupyter Notebook
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Other
•4•2•0•0•Updated Feb 18, 2025Feb 18, 2025
Clinical-BERT-Explainability
Public
To explain clinical BERT model predictions, we present an approach which leverages integrated gradients to attribute events in medical records that lead to an outcome prediction.
bert clinical-data explainable-ai integrated-gradients bert-fine-tuning
Python
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Other
•0•7•0•0•Updated Jan 13, 2025Jan 13, 2025
PMCB-scGFT
Public
A single-cell RNA-seq data generative model
R
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Other
•2•15•0•0•Updated Jan 11, 2025Jan 11, 2025
SKAI
Public
SKAI is a toolbox for analyzing reaction kinetics mechanisms. It includes a reaction network generator and Bayesian inference modeling. Ideal for researchers in chemical kinetics.
Jupyter Notebook
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Other
•0•5•0•0•Updated Jan 11, 2025Jan 11, 2025
CD-spectra-classification
Public
Python
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Other
•0•0•0•0•Updated Dec 19, 2024Dec 19, 2024
RWD-Proxy-Endpoint-Models
Public
Jupyter Notebook
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Other
•1•2•0•0•Updated Dec 16, 2024Dec 16, 2024
mRNA-LM
Public
Python
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Other
•5•13•3•0•Updated Dec 5, 2024Dec 5, 2024
spatialone-pipeline
Public
Spatial One
python bioinformatics spatialomics spatial-biology
Python
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Other
•4•28•0•0•Updated Oct 31, 2024Oct 31, 2024
emrflow
Public
EMRFlow is designed to simplify the process of running PySpark jobs on Amazon EMR (Elastic Map Reduce).
Python
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Apache License 2.0
•0•13•0•0•Updated Oct 2, 2024Oct 2, 2024
LipoBART
Public
Jupyter Notebook
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Other
•2•13•1•0•Updated Oct 2, 2024Oct 2, 2024
PMCB-GWAS_multi-omics_prioritization
Public
R
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Other
•0•2•0•0•Updated Sep 30, 2024Sep 30, 2024
Large_Scale_Multicellular_Modelling_For_RA
Public
Python
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Other
•0•0•0•0•Updated Aug 8, 2024Aug 8, 2024
DMPK-US-ML-mTPA
Public
Jupyter Notebook
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Other
•1•1•0•0•Updated Jun 27, 2024Jun 27, 2024
CodonBERT
Public
Repository for mRNA Paper and CodonBERT publication.
Python
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Other
•24•130•8•0•Updated Jun 12, 2024Jun 12, 2024