Center for Viral Systems Biology

All

17 repositories

cvisb_data
Public
Data portal and API for Center for Viral Systems Biology (CViSB) data
biology systems-biology sequencing immunology systemsbiology hla viral-ngs viral-genomics ebola viral-metagenomics
TypeScript
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MIT License
•0•3•41•0•Updated Jan 13, 2023Jan 13, 2023
curated-alignments
Public
3•0•0•0•Updated Mar 18, 2022Mar 18, 2022
2020_systems-biology_workshop
Public
2020 CViSB Systems Biology Workshop
systems-biology
0•7•0•0•Updated Feb 25, 2020Feb 25, 2020
lassa-ebola-hla
Public
Python
•0•0•0•0•Updated Jan 30, 2020Jan 30, 2020
ivar
Public
C++
•45•0•0•0•Updated Nov 12, 2018Nov 12, 2018
floki
Public
JavaScript
•5•0•0•0•Updated Nov 12, 2018Nov 12, 2018
2019_systems-biology_workshop
Public
0•1•0•0•Updated Oct 19, 2018Oct 19, 2018
VIC-Analysis
Public
Data Analysis for VIC
3•0•0•0•Updated Aug 7, 2018Aug 7, 2018
abstar
Public
VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
Python
•
MIT License
•16•0•0•0•Updated May 26, 2017May 26, 2017
cvisb-web
Public
website
0•0•0•0•Updated Mar 27, 2017Mar 27, 2017
viral-sequence-analysis
Public
Python
•1•0•0•0•Updated Mar 14, 2017Mar 14, 2017
antibodyome_portal
Public
JavaScript
•1•0•0•0•Updated Mar 5, 2017Mar 5, 2017
Cyclops
Public
Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.
C++
•33•0•0•0•Updated Nov 23, 2016Nov 23, 2016
RBeast
Public
R tools for posterior analyses using BEAST
R
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MIT License
•9•0•0•0•Updated Sep 21, 2016Sep 21, 2016
clonify-python
Public
Python
•
MIT License
•7•0•0•0•Updated Aug 8, 2016Aug 8, 2016
RcppBoostCompute
Public
Rcpp wrapper for boost::compute, an STL algorithm-based OpenCL library
C++
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Apache License 2.0
•1•0•0•0•Updated Jul 25, 2016Jul 25, 2016
ab_cluster
Public
C++
•1•0•0•0•Updated Oct 19, 2015Oct 19, 2015