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    78 repositories

    • ilastik

      Public
      ilastik-shell, applets, and workflows to string them together.
      pythonmachine-learningqtilastik
      Python
      •
      Other
      •162•385•543•34•Updated Oct 30, 2025Oct 30, 2025

    • app-pass

      Public
      Fix common issues in Mach-O binaries for notarization
      macosapplemach-omacosxgatekeepercodesigningapp-bundlesnotarizationapp-bundle
      Python
      •
      MIT License
      •0•2•1•0•Updated Oct 28, 2025Oct 28, 2025

    • ilastik-napari

      Public
      ilastik plugin for napari
      ilastiknapari-plugin
      Python
      •
      MIT License
      •3•14•3•2•Updated Oct 27, 2025Oct 27, 2025

    • fastfilters2

      Public
      SIMD-accelerated 2D and 3D image features
      C++
      •
      MIT License
      •0•1•0•6•Updated Oct 27, 2025Oct 27, 2025

    • volumina

      Public
      Volume Slicing and Editing
      Python
      •
      Other
      •81•33•30•12•Updated Oct 27, 2025Oct 27, 2025

    • ilastik4ij

      Public
      ImageJ plugins to run ilastik workflows
      Java
      •
      MIT License
      •18•25•24•5•Updated Oct 15, 2025Oct 15, 2025

    • ilastik.github.io

      Public
      HTML
      •
      Other
      •18•3•21•10•Updated Oct 13, 2025Oct 13, 2025

    • publish-conda-stack

      Public
      Scripts to update our published conda packages when our recipes have changed.
      Python
      •
      MIT License
      •3•0•1•0•Updated Sep 9, 2025Sep 9, 2025

    • ilastikrag

      Public
      ND Region Adjacency Graph with edge feature algorithms
      Jupyter Notebook
      •
      Other
      •2•0•0•0•Updated Aug 29, 2025Aug 29, 2025

    • marching_cubes

      Public
      Standalone marching cubes implementation and Python bindings
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •14•99•3•2•Updated Aug 26, 2025Aug 26, 2025

    • hytra

      Public
      Python module for multi HYpotheses TRAcking
      trackingilastik
      Python
      •
      MIT License
      •7•2•5•1•Updated Aug 25, 2025Aug 25, 2025

    • ndstructs

      Public
      Utility classes to deal with 5d arrays
      Python
      •
      MIT License
      •2•1•1•2•Updated Aug 18, 2025Aug 18, 2025

    • ilastiktools

      Public
      tools for carving
      C++
      •4•1•0•0•Updated Aug 12, 2025Aug 12, 2025

    • ilastik-conda-recipes

      Public
      Conda recipes for building ilastik dependencies.
      Shell
      •16•9•7•0•Updated Aug 4, 2025Aug 4, 2025

    • tiktorch

      Public
      Tiktorch
      Python
      •
      MIT License
      •10•12•41•5•Updated Jul 14, 2025Jul 14, 2025

    • multiHypothesesTracking

      Public
      C++
      •
      MIT License
      •7•12•2•0•Updated Jun 10, 2025Jun 10, 2025

    • conda-3rdparty

      Public
      extract license info for conda environments
      condalicense-managementlicensesconda-environmentconda-packages
      Python
      •
      MIT License
      •0•0•0•0•Updated May 28, 2025May 28, 2025

    • dpct

      Public
      Dynamic Programming Cell Tracking Solver
      C++
      •
      MIT License
      •3•1•0•1•Updated May 7, 2025May 7, 2025

    • webilastik

      Public
      A revision of classic ilastik to drop legacy stuff and make it portable
      Python
      •
      MIT License
      •3•8•9•0•Updated Apr 7, 2025Apr 7, 2025

    • fastfilters

      Public
      fast gaussian and derivative convolutional filters
      C++
      •
      MIT License
      •9•1•0•0•Updated Mar 11, 2025Mar 11, 2025

    • ilastiktools-fork

      Public
      tools for carving
      C++
      •4•0•0•1•Updated Mar 5, 2025Mar 5, 2025

    • bioimage-io-resources

      Public
      resources for the BioImage.IO Model Zoo
      HTML
      •4•2•1•0•Updated Dec 16, 2024Dec 16, 2024

    • cloud_ilastik

      Public
      APIs for running ilastik inside HPB infra
      Python
      •
      Other
      •0•1•15•3•Updated Nov 18, 2024Nov 18, 2024

    • ilastik-oc-feats-cookiecutter

      Public
      cookiecutter for ilastik object feature plugins
      cookiecutterilastik
      Python
      •0•0•0•0•Updated Oct 24, 2024Oct 24, 2024

    • unique-bincount-benchmark

      Public
      Python
      •4•0•0•0•Updated Sep 4, 2024Sep 4, 2024

    • wsdt

      Public
      watershed on distance transform
      Python
      •1•5•0•1•Updated Dec 4, 2023Dec 4, 2023

    • ilastik-feature-selection

      Public
      Select filter features with mutual-information-based methods
      Jupyter Notebook
      •
      MIT License
      •6•11•1•1•Updated Dec 4, 2023Dec 4, 2023

    • neuroglancer

      Public
      WebGL-based viewer for volumetric data
      TypeScript
      •
      Apache License 2.0
      •332•0•0•0•Updated Aug 11, 2023Aug 11, 2023

    • ilastikrag-fork

      Public
      ND Region Adjacency Graph with edge feature algorithms
      Jupyter Notebook
      •
      Other
      •2•0•0•0•Updated Aug 11, 2023Aug 11, 2023

    • netzip.js

      Public
      ZIP file reader optimized for network access
      TypeScript
      •
      MIT License
      •0•0•0•0•Updated Jun 22, 2023Jun 22, 2023