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    • ilastik

      Public
      ilastik-shell, applets, and workflows to string them together.
      Python
      16238554334Updated Oct 30, 2025Oct 30, 2025
    • app-pass

      Public
      Fix common issues in Mach-O binaries for notarization
      Python
      0210Updated Oct 28, 2025Oct 28, 2025
    • ilastik plugin for napari
      Python
      31432Updated Oct 27, 2025Oct 27, 2025
    • SIMD-accelerated 2D and 3D image features
      C++
      0106Updated Oct 27, 2025Oct 27, 2025
    • volumina

      Public
      Volume Slicing and Editing
      Python
      81333012Updated Oct 27, 2025Oct 27, 2025
    • ImageJ plugins to run ilastik workflows
      Java
      1825245Updated Oct 15, 2025Oct 15, 2025
    • HTML
      1832110Updated Oct 13, 2025Oct 13, 2025
    • Scripts to update our published conda packages when our recipes have changed.
      Python
      3010Updated Sep 9, 2025Sep 9, 2025
    • ND Region Adjacency Graph with edge feature algorithms
      Jupyter Notebook
      2000Updated Aug 29, 2025Aug 29, 2025
    • Standalone marching cubes implementation and Python bindings
      C++
      149932Updated Aug 26, 2025Aug 26, 2025
    • hytra

      Public
      Python module for multi HYpotheses TRAcking
      Python
      7251Updated Aug 25, 2025Aug 25, 2025
    • ndstructs

      Public
      Utility classes to deal with 5d arrays
      Python
      2112Updated Aug 18, 2025Aug 18, 2025
    • tools for carving
      C++
      4100Updated Aug 12, 2025Aug 12, 2025
    • Conda recipes for building ilastik dependencies.
      Shell
      16970Updated Aug 4, 2025Aug 4, 2025
    • tiktorch

      Public
      Tiktorch
      Python
      1012415Updated Jul 14, 2025Jul 14, 2025
    • C++
      71220Updated Jun 10, 2025Jun 10, 2025
    • extract license info for conda environments
      Python
      0000Updated May 28, 2025May 28, 2025
    • dpct

      Public
      Dynamic Programming Cell Tracking Solver
      C++
      3101Updated May 7, 2025May 7, 2025
    • A revision of classic ilastik to drop legacy stuff and make it portable
      Python
      3890Updated Apr 7, 2025Apr 7, 2025
    • fast gaussian and derivative convolutional filters
      C++
      9100Updated Mar 11, 2025Mar 11, 2025
    • tools for carving
      C++
      4001Updated Mar 5, 2025Mar 5, 2025
    • resources for the BioImage.IO Model Zoo
      HTML
      4210Updated Dec 16, 2024Dec 16, 2024
    • APIs for running ilastik inside HPB infra
      Python
      01153Updated Nov 18, 2024Nov 18, 2024
    • cookiecutter for ilastik object feature plugins
      Python
      0000Updated Oct 24, 2024Oct 24, 2024
    • Python
      4000Updated Sep 4, 2024Sep 4, 2024
    • wsdt

      Public
      watershed on distance transform
      Python
      1501Updated Dec 4, 2023Dec 4, 2023
    • Select filter features with mutual-information-based methods
      Jupyter Notebook
      61111Updated Dec 4, 2023Dec 4, 2023
    • WebGL-based viewer for volumetric data
      TypeScript
      332000Updated Aug 11, 2023Aug 11, 2023
    • ND Region Adjacency Graph with edge feature algorithms
      Jupyter Notebook
      2000Updated Aug 11, 2023Aug 11, 2023
    • netzip.js

      Public
      ZIP file reader optimized for network access
      TypeScript
      0000Updated Jun 22, 2023Jun 22, 2023