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    20 repositories

    • kantele

      Public
      Lab proteomics raw and search data management
      Python
      •1•2•34•1•Updated Oct 29, 2025Oct 29, 2025

    • static-resources

      Public
      Resources that are unlikely to change often, such as configs, test, or infrastructure data
      MIT License
      •0•0•0•0•Updated Oct 22, 2025Oct 22, 2025

    • nf-msconvert

      Public
      Leverages proteowizard's msconvert in a nextflow workflow
      Nextflow
      •
      MIT License
      •1•0•0•0•Updated Oct 22, 2025Oct 22, 2025

    • ddamsproteomics

      Public
      A Nextflow MS DDA proteomics pipeline
      Nextflow
      •
      MIT License
      •6•6•5•1•Updated Oct 20, 2025Oct 20, 2025

    • workshop_tnbc_scilifelab_pkg

      Public
      Container push for workshop while docker hub is down
      0•0•0•0•Updated Oct 20, 2025Oct 20, 2025

    • nf-helaqc_refine

      Public
      Lehtiö lab analysis workflows
      Nextflow
      •
      MIT License
      •4•5•1•0•Updated Oct 13, 2025Oct 13, 2025

    • lehtiolab.github.io

      Public
      Code & development space for producing new lehtiolab website
      JavaScript
      •0•0•4•0•Updated Sep 29, 2025Sep 29, 2025

    • lehtiodocs

      Public
      0•0•2•0•Updated Aug 22, 2025Aug 22, 2025

    • msstitch

      Public
      MS proteomics post-processing utilities
      Python
      •
      MIT License
      •3•5•0•0•Updated Feb 1, 2025Feb 1, 2025

    • MTBP_LC

      Public
      R
      •
      MIT License
      •2•0•0•0•Updated Oct 25, 2024Oct 25, 2024

    • nf-labelcheck

      Public
      Proteomics nextflow labelcheck pipeline with report
      Nextflow
      •
      MIT License
      •1•1•2•0•Updated Sep 25, 2024Sep 25, 2024

    • proteogenomics-analysis-workflow

      Public
      IPAW: a Nextflow workflow for proteogenomics
      Python
      •9•28•7•1•Updated Aug 8, 2024Aug 8, 2024

    • meltmatch

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 20, 2024Mar 20, 2024

    • instruments

      Public
      0•0•12•0•Updated Feb 9, 2024Feb 9, 2024

    • old_website

      Public
      Lehtiolab website
      HTML
      •
      MIT License
      •3•1•0•0•Updated Jul 8, 2023Jul 8, 2023

    • verkstad_server

      Public
      Server module for the alternative mass spec maintenance app. Runs in a docker container. Förstås.
      nodejsdockersqliteproteomicsspectrometermasspec
      Vue
      •0•1•1•18•Updated Feb 24, 2023Feb 24, 2023

    • verkstad_client

      Public
      The alternative ToDo app, optimized for proteomics mass spectrometer maintenance.
      vueproteomicstodoappspectrometer
      Vue
      •
      MIT License
      •0•6•1•25•Updated Jan 3, 2023Jan 3, 2023

    • Code-Availability

      Public
      Code availability for Lehtiö lab papers
      R
      •
      MIT License
      •8•3•1•0•Updated Jul 1, 2021Jul 1, 2021

    • nf-deqms

      Public
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Nov 18, 2020Nov 18, 2020

    • tools-galaxy

      Public
      Lehtiö proteomics lab misc tools
      R
      •
      MIT License
      •0•0•0•0•Updated Oct 18, 2017Oct 18, 2017