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    74 repositories

    • misha

      Public
      Genomic data analysis suite
      genomic-data-analysis
      C++
      •
      Other
      •1•4•0•2•Updated Nov 3, 2025Nov 3, 2025

    • Mendelson_et_al_2023

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Oct 28, 2025Oct 28, 2025

    • iceqream

      Public
      R
      •
      Other
      •1•5•0•0•Updated Oct 21, 2025Oct 21, 2025

    • prego

      Public
      C++
      •
      Other
      •0•0•1•0•Updated Oct 20, 2025Oct 20, 2025

    • MCView

      Public
      A shiny app for metacell analysis
      R
      •
      Other
      •2•10•4•0•Updated Oct 19, 2025Oct 19, 2025

    • mcATAC

      Public
      Metacell analysis for ATAC data
      R
      •
      Other
      •0•1•3•1•Updated Sep 17, 2025Sep 17, 2025

    • dafr

      Public
      R
      •
      Other
      •0•0•0•1•Updated Sep 1, 2025Sep 1, 2025

    • IQ-paper

      Public
      Code to reproduce figures from Iceqream (IQ) manuscript
      Jupyter Notebook
      •0•0•0•0•Updated Aug 24, 2025Aug 24, 2025

    • MCView-server

      Public
      A containerized deployment of MCView
      Shell
      •
      MIT License
      •0•0•0•0•Updated Aug 19, 2025Aug 19, 2025

    • Gmara

      Public
      Genes Manifests Archive for RNA Analysis
      Python
      •
      MIT License
      •1•2•0•0•Updated Aug 19, 2025Aug 19, 2025

    • misha.ext

      Public
      A home for some function that extend the `misha` package.
      R
      •
      Other
      •1•0•0•0•Updated Aug 13, 2025Aug 13, 2025

    • SomeGraphs.jl

      Public
      Generate graphs (using Plotly)
      HTML
      •
      MIT License
      •0•0•0•0•Updated Aug 11, 2025Aug 11, 2025

    • DataAxesFormats.jl

      Public
      Data in Axes in Formats
      Julia
      •
      MIT License
      •0•0•0•0•Updated Aug 11, 2025Aug 11, 2025

    • TanayLabUtilities.jl

      Public
      Generic utilities used by the Julia code for the Tanay lab.
      Julia
      •
      MIT License
      •0•0•0•0•Updated Aug 11, 2025Aug 11, 2025

    • Metacells.jl

      Public
      Single-cell scRNA Analysis
      Julia
      •
      MIT License
      •0•1•0•0•Updated Jul 6, 2025Jul 6, 2025

    • tgutil

      Public
      Tanay group collection of simple utility functions
      R
      •0•5•0•0•Updated Jun 17, 2025Jun 17, 2025

    • Slanter.jl

      Public
      Reorder matrices rows and columns to move high values close to the diagonal.
      Julia
      •
      MIT License
      •0•0•0•0•Updated Jun 12, 2025Jun 12, 2025

    • dafpy

      Public
      Data in Axes in Formats
      Python
      •
      MIT License
      •0•0•0•0•Updated May 13, 2025May 13, 2025

    • Narwhal

      Public
      NFS Read/Write Locks
      C
      •
      MIT License
      •0•0•0•0•Updated Apr 10, 2025Apr 10, 2025

    • mmcortex

      Public
      R
      •
      MIT License
      •0•1•0•0•Updated Apr 6, 2025Apr 6, 2025

    • Chameleon.jl

      Public
      Automatic colors for multi-dimensional data
      Julia
      •
      MIT License
      •0•1•1•0•Updated Mar 22, 2025Mar 22, 2025

    • naryn

      Public
      Native Access medical record Retriever for high Yield aNalytics
      data-analysismedical-records
      C++
      •
      Other
      •0•3•10•0•Updated Mar 17, 2025Mar 17, 2025

    • MCNoise

      Public
      scRNA-seq ambient noise estimation and removal pipeline base on Metacell
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Mar 11, 2025Mar 11, 2025

    • metacell

      Public
      Metacell - Single-cell mRNA Analysis
      single-cell-rna-seq
      R
      •
      Other
      •30•117•30•0•Updated Jan 26, 2025Jan 26, 2025

    • tglkmeans

      Public
      Efficient Implementation of Kmeans++ Algorithm
      rkmeansalgorithms-implemented
      C++
      •
      Other
      •2•7•1•0•Updated Jan 20, 2025Jan 20, 2025

    • blood_aging

      Public
      code companion for "A reference model for circulating hematopoietic stem cells with applications to diagnostics"
      Python
      •1•1•1•0•Updated Jan 5, 2025Jan 5, 2025

    • metacells

      Public
      Metacells - Single-cell RNA Sequencing Analysis
      Python
      •
      MIT License
      •8•114•17•0•Updated Sep 27, 2024Sep 27, 2024

    • tgstat

      Public
      Fast and efficient statistical tools from the Tanay lab
      statisticscorrelationknnalgorithms-implemented
      C++
      •3•8•0•0•Updated Sep 24, 2024Sep 24, 2024

    • MCGraphs.jl

      Public
      Generate graphs for visualizing scRNA-seq metacells data in a Daf data set.
      HTML
      •
      MIT License
      •0•0•0•0•Updated Sep 15, 2024Sep 15, 2024

    • mars_annotations

      Public
      R
      •0•0•0•0•Updated Jun 8, 2024Jun 8, 2024