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This repository was archived by the owner on Sep 25, 2018. It is now read-only.
This repository was archived by the owner on Sep 25, 2018. It is now read-only.

Add parser/writer for GAF #14

@cmungall

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@cmungall

Many groups use GAFs for phenotypes as well as GO - e.g. planteome (cc @jhpoelen)

Conversely, pxf is generic enough for GO annotations (which are essentially normal, evolved phenotypes for genes)

It would be useful to read/write from GAFs into the phenopacket datamodel.

There are also a family of similar formats which could follow the same pattern. E.g. PAFs:
phenopackets/phenopacket-format#67

And of course the HPOA (non-phenote) TSVs

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