Skip to content

Maybe support stats for anndata.abc.CS*Dataset with anndata 0.12 #52

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
flying-sheep opened this issue Mar 7, 2025 · 0 comments
Open
Labels
type: disk Disk-backed Array types (zarr/hdf5)

Comments

@flying-sheep
Copy link
Member

We might be able to run sum, mean, and maybe even mean_var on it with sparrays:

with anndata.settings.override(use_sparse_array_on_read=True):
    return np.sum(sds)
@flying-sheep flying-sheep added the type: disk Disk-backed Array types (zarr/hdf5) label Mar 11, 2025
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
type: disk Disk-backed Array types (zarr/hdf5)
Projects
None yet
Development

No branches or pull requests

1 participant