From 3c417be283e6ed4bf6b231b92e6c9499e307e304 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Fri, 18 Jul 2025 18:04:05 +0000 Subject: [PATCH] chore(deps): bump virtool-workflow from 7.2.1 to 7.2.2 Bumps [virtool-workflow](https://github.com/virtool/virtool-workflow) from 7.2.1 to 7.2.2. - [Release notes](https://github.com/virtool/virtool-workflow/releases) - [Changelog](https://github.com/virtool/virtool-workflow/blob/main/.releaserc) - [Commits](https://github.com/virtool/virtool-workflow/compare/7.2.1...7.2.2) --- updated-dependencies: - dependency-name: virtool-workflow dependency-version: 7.2.2 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] --- poetry.lock | 494 ++++++++++++------------------------------------- pyproject.toml | 2 +- 2 files changed, 124 insertions(+), 372 deletions(-) diff --git a/poetry.lock b/poetry.lock index d3492a9..16a6026 100644 --- a/poetry.lock +++ b/poetry.lock @@ -41,104 +41,104 @@ files = [ [[package]] name = "aiohttp" -version = "3.12.12" +version = "3.12.14" description = "Async http client/server framework (asyncio)" optional = false python-versions = ">=3.9" groups = ["main"] files = [ - {file = "aiohttp-3.12.12-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:6f25e9d274d6abbb15254f76f100c3984d6b9ad6e66263cc60a465dd5c7e48f5"}, - {file = "aiohttp-3.12.12-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:b8ec3c1a1c13d24941b5b913607e57b9364e4c0ea69d5363181467492c4b2ba6"}, - {file = "aiohttp-3.12.12-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:81ef2f9253c327c211cb7b06ea2edd90e637cf21c347b894d540466b8d304e08"}, - {file = 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[[package]] name = "six" version = "1.16.0" @@ -2576,44 +2331,41 @@ test = ["aiohttp (>=3.10.5)", "flake8 (>=5.0,<6.0)", "mypy (>=0.800)", "psutil", [[package]] name = "virtool" -version = "31.1.3" +version = "31.9.0" description = "Viral infection diagnostics using next-generation sequencing" optional = false python-versions = "<3.13.0,>3.12.0" groups = ["main"] files = [ - {file = "virtool-31.1.3-py3-none-any.whl", hash = "sha256:23069f201b6f6916e4fe85a9afee6929d7df5826e03c50770c1f10a9d08acb80"}, - {file = "virtool-31.1.3.tar.gz", hash = "sha256:129acd921592b451da30b9d4eb81e07052953e6e2d661e6b39f07a305dd59464"}, + {file = "virtool-31.9.0-py3-none-any.whl", hash = "sha256:96d5dd2733ec3dcf2b9fe9f96a92f3a5c07fb88a99fa13a2750888e9d9de506f"}, + {file = "virtool-31.9.0.tar.gz", hash = "sha256:6942b96a785b3a6302d0b21cd67ce8e72192e8fa9480e39bca072223cb039663"}, ] [package.dependencies] -aiohttp = {version = ">=3.10,<4.0", extras = ["speedups"]} +aiohttp = {version = ">=3.12,<4.0", extras = ["speedups"]} aiohttp-pydantic = ">=1.12.1,<2.0.0" aiojobs = "1.2.1" -alembic = {version = ">=1.10.3,<2.0.0", extras = ["tz"]} +alembic = {version = ">=1.16.2,<2.0.0", extras = ["tz"]} arrow = ">=1.3.0,<2.0.0" asyncpg = ">=0.30.0,<0.31.0" bcrypt = ">=4.0.0,<5.0.0" biopython = ">=1.84,<2.0" Cerberus = ">=1.3.4,<2.0.0" -certifi = ">=2024.8.30,<2025.0.0" -click = ">=8.0.1,<9.0.0" -dictdiffer = ">=0.8.1,<0.9.0" +certifi = ">=2025.6.15,<2026.0.0" +click = ">=8.2.1,<9.0.0" +dictdiffer = ">=0.9.0,<0.10.0" email-validator = ">=2.0.0,<3.0.0" enum-tools = ">=0.13.0,<0.14.0" faker = ">=12.3.3,<13.0.0" -motor = ">=3.6.0,<4.0.0" -msal = ">=1.16.0,<2.0.0" +motor = ">=3.7.1,<4.0.0" openfga-sdk = ">=0.1.1,<0.2.0" openpyxl = ">=3.1.5,<4.0.0" orjson = ">=3.8.0,<4.0.0" pydantic = "1.10.16" -pyjwt = ">=2.9.0,<3.0.0" pyyaml = ">=6.0.0,<7.0.0" redis = ">=6.2.0,<7.0.0" semver = ">=2.13.0,<3.0.0" -sentry-sdk = ">=2.18.0,<3.0.0" -setuptools = ">=75.3.0,<76.0.0" +sentry-sdk = ">=2.30.0,<3.0.0" sqlalchemy = "2.0.24" structlog-sentry = ">=2.1.0,<3.0.0" uvloop = ">=0.21.0,<0.22.0" @@ -2621,19 +2373,19 @@ visvalingamwyatt = ">=0.1.4,<0.2.0" [[package]] name = "virtool-workflow" -version = "7.2.1" +version = "7.2.2" description = "A framework for developing bioinformatics workflows for Virtool." optional = false python-versions = "<3.13.0,>=3.12.3" groups = ["main"] files = [ - 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