Coord2Region maps 3D brain coordinates to anatomical regions, retrieves related studies, and uses large language models to summarize findings or generate images.
- Automatic anatomical labeling across multiple atlases
- LLM-powered summaries of nearby literature
- Coordinate-to-study lookups via Neurosynth, NeuroQuery, etc.
- AI-generated region images
- Command-line and Python interfaces
Requires Python 3.10 or later. We recommend installing in a virtual environment:
python -m venv .venv
source .venv/bin/activate
pip install coord2regionTo work on Coord2Region itself, install the optional dependencies:
pip install '.[dev]' # linting and tests
pip install '.[docs]' # documentation buildOn shells like zsh, keep the extras spec in quotes to avoid glob expansion errors.
Set environment variables like OPENAI_API_KEY or GEMINI_API_KEY to enable LLM-based features.
coord2region coords-to-atlas 30 -22 50 --atlas harvard-oxfordOther use cases:
coord2region coords-to-summary 30 -22 50→ text summary from related studiescoord2region coords-to-image 30 -22 50→ AI-generated region image
Full usage instructions and API details are available in the documentation.