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Adjusted relative paths of CMakeLists.txt #524

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78 changes: 40 additions & 38 deletions CMakeLists.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@ project(CRPropa Fortran C CXX)
set(CRPROPA_RELEASE_VERSION 3.2.1+) # Update for new release

set(CMAKE_CXX_STANDARD 11)
set(CMAKE_MODULE_PATH "${CMAKE_SOURCE_DIR}/cmake" ${CMAKE_MODULE_PATH})
set(CMAKE_MODULE_PATH "${CMAKE_CURRENT_SOURCE_DIR}/cmake" ${CMAKE_MODULE_PATH})

set(CRPROPA_EXTRA_SOURCES)
set(CRPROPA_EXTRA_INCLUDES)
Expand Down Expand Up @@ -88,8 +88,8 @@ list(APPEND CRPROPA_EXTRA_SOURCES "${CMAKE_CURRENT_BINARY_DIR}/src/Version.cpp")
# Why is it not recommended use a pre-compiled copy of Google Test?)
option(ENABLE_TESTING "Build tests and enable test target" ON)
if(ENABLE_TESTING)
include_directories(libs/gtest/include)
add_subdirectory(libs/gtest)
include_directories(${CMAKE_CURRENT_SOURCE_DIR}/libs/gtest/include)
add_subdirectory(${CMAKE_CURRENT_SOURCE_DIR}/libs/gtest)
if(APPLE)
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -DGTEST_USE_OWN_TR1_TUPLE=1")
endif(APPLE)
Expand Down Expand Up @@ -142,19 +142,19 @@ if(ENABLE_COVERAGE)
endif(ENABLE_COVERAGE)

# kiss (provided)
add_subdirectory(libs/kiss)
add_subdirectory(${CMAKE_CURRENT_SOURCE_DIR}/libs/kiss)
list(APPEND CRPROPA_EXTRA_LIBRARIES kiss)
list(APPEND CRPROPA_EXTRA_INCLUDES libs/kiss/include)
list(APPEND CRPROPA_EXTRA_INCLUDES ${CMAKE_CURRENT_SOURCE_DIR}/libs/kiss/include)

# HepID (provided)
add_subdirectory(libs/HepPID)
add_subdirectory(${CMAKE_CURRENT_SOURCE_DIR}/libs/HepPID)
list(APPEND CRPROPA_EXTRA_LIBRARIES HepPID)
list(APPEND CRPROPA_EXTRA_INCLUDES libs/HepPID/include)
list(APPEND CRPROPA_EXTRA_INCLUDES ${CMAKE_CURRENT_SOURCE_DIR}/libs/HepPID/include)

# SOPHIA (provided)
add_subdirectory(libs/sophia)
add_subdirectory(${CMAKE_CURRENT_SOURCE_DIR}/libs/sophia)
list(APPEND CRPROPA_EXTRA_LIBRARIES sophia gfortran)
list(APPEND CRPROPA_EXTRA_INCLUDES libs/sophia)
list(APPEND CRPROPA_EXTRA_INCLUDES ${CMAKE_CURRENT_SOURCE_DIR}/libs/sophia)

# Galactic magnetic lenses
option(ENABLE_GALACTICMAGNETICLENS "Galactic Magnetic Lens" ON)
Expand All @@ -171,24 +171,24 @@ if(ENABLE_GALACTICMAGNETICLENS)
else(EIGEN_PATH)
# Eigen redux (provided)
message("Using provided EIGEN")
list(APPEND CRPROPA_EXTRA_INCLUDES libs/eigen3)
list(APPEND CRPROPA_EXTRA_INCLUDES ${CMAKE_CURRENT_SOURCE_DIR}/libs/eigen3)
endif(EIGEN_PATH)
if(INSTALL_EIGEN)
install(DIRECTORY libs/eigen3/ DESTINATION include)
install(DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}/libs/eigen3/ DESTINATION ${CMAKE_CURRENT_SOURCE_DIR}/include)
endif(INSTALL_EIGEN)

# healpix redux (provided)
add_subdirectory(libs/healpix_base)
add_subdirectory(${CMAKE_CURRENT_SOURCE_DIR}/libs/healpix_base)
list(APPEND CRPROPA_EXTRA_LIBRARIES healpix_base)
list(APPEND CRPROPA_EXTRA_INCLUDES libs/healpix_base/include)
install(DIRECTORY libs/healpix_base/include/ DESTINATION include FILES_MATCHING PATTERN "*.h")
list(APPEND CRPROPA_EXTRA_INCLUDES ${CMAKE_CURRENT_SOURCE_DIR}/libs/healpix_base/include)
install(DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}/libs/healpix_base/include/ DESTINATION ${CMAKE_CURRENT_SOURCE_DIR}/include FILES_MATCHING PATTERN "*.h")

list(APPEND CRPROPA_SWIG_DEFINES -DWITH_GALACTIC_LENSES)

list(APPEND CRPROPA_EXTRA_SOURCES src/magneticLens/MagneticLens.cpp)
list(APPEND CRPROPA_EXTRA_SOURCES src/magneticLens/ModelMatrix.cpp)
list(APPEND CRPROPA_EXTRA_SOURCES src/magneticLens/Pixelization.cpp)
list(APPEND CRPROPA_EXTRA_SOURCES src/magneticLens/ParticleMapsContainer.cpp)
list(APPEND CRPROPA_EXTRA_SOURCES ${CMAKE_CURRENT_SOURCE_DIR}/src/magneticLens/MagneticLens.cpp)
list(APPEND CRPROPA_EXTRA_SOURCES ${CMAKE_CURRENT_SOURCE_DIR}/src/magneticLens/ModelMatrix.cpp)
list(APPEND CRPROPA_EXTRA_SOURCES ${CMAKE_CURRENT_SOURCE_DIR}/src/magneticLens/Pixelization.cpp)
list(APPEND CRPROPA_EXTRA_SOURCES ${CMAKE_CURRENT_SOURCE_DIR}/src/magneticLens/ParticleMapsContainer.cpp)
endif(ENABLE_GALACTICMAGNETICLENS)

# OpenMP (optional for shared memory multiprocessing)
Expand Down Expand Up @@ -252,7 +252,7 @@ endif(MUPARSER_FOUND)
find_package(ZLIB)
if(ZLIB_FOUND)
list(APPEND CRPROPA_EXTRA_INCLUDES ${ZLIB_INCLUDE_DIRS})
list(APPEND CRPROPA_EXTRA_INCLUDES "libs/zstream-cpp")
list(APPEND CRPROPA_EXTRA_INCLUDES "${CMAKE_CURRENT_SOURCE_DIR}/libs/zstream-cpp")
list(APPEND CRPROPA_EXTRA_LIBRARIES ${ZLIB_LIBRARIES})
add_definitions (-DCRPROPA_HAVE_ZLIB)
list(APPEND CRPROPA_SWIG_DEFINES -DCRPROPA_HAVE_ZLIB)
Expand Down Expand Up @@ -289,7 +289,7 @@ if(APPLE OR USE_ABSOLUTE_RPATH)
set(CMAKE_INSTALL_RPATH_USE_LINK_PATH TRUE)
set(ABSOLUTE_RPATH "${CMAKE_INSTALL_PREFIX}/lib${LIB_SUFFIX}")
if(NOT IS_ABSOLUTE ${ABSOLUTE_RPATH})
set(ABSOLUTE_RPATH ${CMAKE_BINARY_DIR}/${ABSOLUTE_RPATH})
set(ABSOLUTE_RPATH ${CMAKE_CURRENT_BINARY_DIR}/${ABSOLUTE_RPATH})
endif()

list(FIND CMAKE_PLATFORM_IMPLICIT_LINK_DIRECTORIES "${ABSOLUTE_RPATH}" isSystemDir)
Expand All @@ -313,31 +313,33 @@ if(DOWNLOAD_DATA)
message("-- Downloading data files from sciebo ~ 73 MB")
file(DOWNLOAD
https://ruhr-uni-bochum.sciebo.de/public.php/webdav/data-${CRPROPA_DATAFILE_VER}.tar.gz-CHECKSUM
${CMAKE_BINARY_DIR}/data-${CRPROPA_DATAFILE_VER}.tar.gz-CHECKSUM
${CMAKE_CURRENT_BINARY_DIR}/data-${CRPROPA_DATAFILE_VER}.tar.gz-CHECKSUM
USERPWD "3juW9sntQX2IWBS")
file(STRINGS ${CMAKE_BINARY_DIR}/data-${CRPROPA_DATAFILE_VER}.tar.gz-CHECKSUM DATA_CHECKSUM LIMIT_COUNT 1 LENGTH_MINIMUM 32 LENGTH_MAXIMUM 32)
file(STRINGS ${CMAKE_CURRENT_BINARY_DIR}/data-${CRPROPA_DATAFILE_VER}.tar.gz-CHECKSUM DATA_CHECKSUM LIMIT_COUNT 1 LENGTH_MINIMUM 32 LENGTH_MAXIMUM 32)
file(DOWNLOAD
https://ruhr-uni-bochum.sciebo.de/public.php/webdav/data-${CRPROPA_DATAFILE_VER}.tar.gz
${CMAKE_BINARY_DIR}/data-${CRPROPA_DATAFILE_VER}.tar.gz
${CMAKE_CURRENT_BINARY_DIR}/data-${CRPROPA_DATAFILE_VER}.tar.gz
USERPWD "3juW9sntQX2IWBS"
EXPECTED_MD5 "${DATA_CHECKSUM}")
message("-- Extracting data file")
else()
message("-- Downloading of data file disabled")
endif(DOWNLOAD_DATA)
if(EXISTS ${CMAKE_BINARY_DIR}/data-${CRPROPA_DATAFILE_VER}.tar.gz)
execute_process(COMMAND ${CMAKE_COMMAND} -E tar xzf ${CMAKE_BINARY_DIR}/data-${CRPROPA_DATAFILE_VER}.tar.gz WORKING_DIRECTORY ${CMAKE_BINARY_DIR})
execute_process(COMMAND ${CMAKE_COMMAND} -E copy_directory ${CMAKE_BINARY_DIR}/data-${CRPROPA_DATAFILE_VER}/data ${CMAKE_BINARY_DIR}/data/ WORKING_DIRECTORY ${CMAKE_BINARY_DIR})
execute_process(COMMAND ${CMAKE_COMMAND} -E remove_directory ${CMAKE_BINARY_DIR}/data-${CRPROPA_DATAFILE_VER}/ WORKING_DIRECTORY ${CMAKE_BINARY_DIR})
if(EXISTS ${CMAKE_CURRENT_BINARY_DIR}/data-${CRPROPA_DATAFILE_VER}.tar.gz)
execute_process(COMMAND ${CMAKE_COMMAND} -E tar xzf ${CMAKE_CURRENT_BINARY_DIR}/data-${CRPROPA_DATAFILE_VER}.tar.gz WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
execute_process(COMMAND ${CMAKE_COMMAND} -E copy_directory ${CMAKE_CURRENT_BINARY_DIR}/data-${CRPROPA_DATAFILE_VER}/data ${CMAKE_CURRENT_BINARY_DIR}/data/ WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
execute_process(COMMAND ${CMAKE_COMMAND} -E remove_directory ${CMAKE_CURRENT_BINARY_DIR}/data-${CRPROPA_DATAFILE_VER}/ WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
else()
message(WARNING "CRPropa data file not found at ${CMAKE_BINARY_DIR}/data-${CRPROPA_DATAFILE_VER}.tar.gz
message(WARNING "CRPropa data file not found at ${CMAKE_CURRENT_BINARY_DIR}/data-${CRPROPA_DATAFILE_VER}.tar.gz
CRPropa should compile, but will likely not work properly! Please install data file manually, or use the automatic download which is enabled by default.")
endif()

# ----------------------------------------------------------------------------
# Library and Binary
# ----------------------------------------------------------------------------
file(GLOB_RECURSE CRPROPA_INCLUDES RELATIVE ${CMAKE_SOURCE_DIR} include/*.h)
file(GLOB_RECURSE CRPROPA_INCLUDES RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} include/*.h)
# set CRPROPA_EXTRA_INCLUDES as cache variable to hand it over when used as subproject
set(CRPROPA_EXTRA_INCLUDES "${CRPROPA_EXTRA_INCLUDES}" CACHE STRING "The include paths of the extra libraries that are needed." FORCE)
include_directories(include ${CRPROPA_EXTRA_INCLUDES})

add_library(crpropa SHARED
Expand Down Expand Up @@ -428,7 +430,7 @@ if(BUILD_DOC)
configure_file(${CMAKE_CURRENT_SOURCE_DIR}/doc/DoxygenLayout.xml ${CMAKE_CURRENT_BINARY_DIR}/DoxygenLayout.xml COPYONLY)
add_custom_target(doxy ${DOXYGEN_EXECUTABLE} ${CMAKE_CURRENT_BINARY_DIR}/Doxyfile WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR} COMMENT "Generating API documentation with Doxygen" VERBATIM)

set_source_files_properties(${CMAKE_BINARY_DIR}/docstrings_from_doxy.i PROPERTIES GENERATED true )
set_source_files_properties(${CMAKE_CURRENT_BINARY_DIR}/docstrings_from_doxy.i PROPERTIES GENERATED true )
add_custom_target(docstrings_from_doxy
COMMAND ${CMAKE_CURRENT_SOURCE_DIR}/libs/doxy2swig/doxy2swig.py ${CMAKE_CURRENT_BINARY_DIR}/xml/index.xml -o ${CMAKE_CURRENT_BINARY_DIR}/docstrings_from_doxy.i
DEPENDS doxy
Expand Down Expand Up @@ -489,9 +491,9 @@ if(ENABLE_PYTHON AND Python_FOUND)
list(APPEND CRPROPA_SWIG_DEFINES -doxygen)
else()
if(BUILD_DOC AND DOXYGEN_FOUND)
LIST(APPEND CRPROPA_SWIG_INPUTS ${CMAKE_BINARY_DIR}/docstrings_from_doxy.i)
LIST(APPEND CRPROPA_SWIG_INPUTS ${CMAKE_CURRENT_BINARY_DIR}/docstrings_from_doxy.i)
list(APPEND CRPROPA_SWIG_DEFINES -DWITH_DOXYGEN)
list(APPEND SWIG_INCLUDE_DIRECTORIES ${CMAKE_BINARY_DIR})
list(APPEND SWIG_INCLUDE_DIRECTORIES ${CMAKE_CURRENT_BINARY_DIR})
endif(BUILD_DOC AND DOXYGEN_FOUND)
endif(SWIG_VERSION VERSION_GREATER 4.0)

Expand All @@ -515,7 +517,7 @@ if(ENABLE_PYTHON AND Python_FOUND)
file(GLOB_RECURSE CRPROPA_SWIG_INPUTS python/*.i)
set_source_files_properties(${CMAKE_CURRENT_BINARY_DIR}/crpropa_wrap.cxx PROPERTIES GENERATED true)
add_custom_target(crpropa-swig-wrapper
COMMAND swig ${BUILTIN} -c++ -python -I${CMAKE_SOURCE_DIR}/include -I${CMAKE_SOURCE_DIR}/libs/HepPID/include ${SWIG_INCLUDES} ${CRPROPA_SWIG_DEFINES} -dirprot -o ${CMAKE_CURRENT_BINARY_DIR}/crpropa_wrap.cxx -outdir ${CMAKE_CURRENT_BINARY_DIR} ${CMAKE_SOURCE_DIR}/python/crpropa${BUILTIN}.i
COMMAND swig ${BUILTIN} -c++ -python -I${CMAKE_CURRENT_SOURCE_DIR}/include -I${CMAKE_CURRENT_SOURCE_DIR}/libs/HepPID/include ${SWIG_INCLUDES} ${CRPROPA_SWIG_DEFINES} -dirprot -o ${CMAKE_CURRENT_BINARY_DIR}/crpropa_wrap.cxx -outdir ${CMAKE_CURRENT_BINARY_DIR} ${CMAKE_CURRENT_SOURCE_DIR}/python/crpropa${BUILTIN}.i
DEPENDS ${CRPROPA_SWIG_INPUTS} ${CRPROPA_INCLUDES} )

if(BUILD_DOC AND DOXYGEN_FOUND)
Expand All @@ -530,7 +532,7 @@ if(ENABLE_PYTHON AND Python_FOUND)
target_link_libraries(crpropa-swig crpropa ${Python_LIBRARIES} ${Python_LIBRARY})
add_dependencies(crpropa-swig crpropa-swig-wrapper)

install(DIRECTORY "${CMAKE_SOURCE_DIR}/python/crpropa" DESTINATION "${Python_INSTALL_PACKAGE_DIR}")
install(DIRECTORY "${CMAKE_CURRENT_SOURCE_DIR}/python/crpropa" DESTINATION "${Python_INSTALL_PACKAGE_DIR}")
install(FILES "${CMAKE_CURRENT_BINARY_DIR}/crpropa.py" DESTINATION "${Python_INSTALL_PACKAGE_DIR}/crpropa")
install(TARGETS crpropa-swig LIBRARY DESTINATION "${Python_INSTALL_PACKAGE_DIR}/crpropa")
install(FILES ${CRPROPA_SWIG_INPUTS} DESTINATION share/crpropa/swig_interface)
Expand All @@ -543,10 +545,10 @@ endif(ENABLE_PYTHON AND Python_FOUND)
# ----------------------------------------------------------------------------
add_definitions(-DCRPROPA_INSTALL_PREFIX="${CMAKE_INSTALL_PREFIX}")
install(TARGETS crpropa DESTINATION lib)
install(DIRECTORY include/ DESTINATION include FILES_MATCHING PATTERN "*.h")
install(DIRECTORY ${CMAKE_BINARY_DIR}/include/ DESTINATION include FILES_MATCHING PATTERN "*.h")
install(DIRECTORY ${CMAKE_BINARY_DIR}/data/ DESTINATION share/crpropa/ PATTERN ".git" EXCLUDE)
install(DIRECTORY libs/kiss/include/ DESTINATION include)
install(DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}/include/ DESTINATION include FILES_MATCHING PATTERN "*.h")
install(DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/include/ DESTINATION include FILES_MATCHING PATTERN "*.h")
install(DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/data/ DESTINATION share/crpropa/ PATTERN ".git" EXCLUDE)
install(DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}/libs/kiss/include/ DESTINATION include)

# ------------------------------------------------------------------
# Documentation
Expand Down
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