Benchmark of protein-carbohydrate interactions

Fitness landscapes for antibodies

DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.

CAPSIF2 and PiCAP

AlphaFold-initiated replica exchange protein docking

Colab Notebooks covering deep learning tools for biomolecular structure prediction and design

Generative Language Modeling for Antibody Design

Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.

This repository contains the dataset of 29 transmembrane protein complexes of different rigidity along with their unbound protein structure. Additionally, there are scripts to submit relaxing and docking complexes given there unbound monomer structures.