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1. PHATE PHATE Public

   PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.

   Python 523 78

2. MAGIC MAGIC Public

   MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.

   Jupyter Notebook 371 97

3. SAUCIE SAUCIE Public

   Python 100 28

4. MELD MELD Public

   Quantifying experimental perturbations at single cell resolution

   Python 110 10

5. Multiscale_PHATE Multiscale_PHATE Public

   Creating multi-resolution embeddings and clusters from high dimensional data

   Jupyter Notebook 55 11

6. TrajectoryNet TrajectoryNet Public

   TrajectoryNet: A Dynamic Optimal Transport Network for Modeling Cellular Dynamics

   Jupyter Notebook 124 16