Introducing Cellpose-SAM!
New in cellpose v4
- Cellpose-SAM aka CP4 is fully integrated in to the CLI/API/GUI and notebooks
cellpose.models.Cellpose
class was removed, users should now only usecellpose.models.CellposeModel
- Size estimation via
cellpose.models.SizeModel
class was removed. Users don't have to use thediameter
setting since CP4 is much more robust to object size. - Denoising components via
cellpose.denoise
is currently not available. - Added more comprehensive testing
- Better utilization of MPS for Mac users when doing 3D segmentation
- Added
--save_each
flag for training from the CLI - More details are available in the paper, talk, and in the docs.
New Contributors
- @KevinCortacero made their first contribution in #1080
- @unikill066 made their first contribution in #1159
Changelog for early cellpose v4 changes: v4.0.1...v4.0.4