Skip running test_run_experiments.py tests in CI. Reorganized environment files by splitting environment.yml into specific requirement files (e.g., full, streaming, stimpres, docsbuild). Updated installation instructions to align with the new environment structure and clarified differences for macOS arm64.
#661
Workflow file for this run
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| name: Test | |
| on: | |
| push: | |
| branches: [ master, develop ] | |
| pull_request: | |
| branches: [ master, develop ] | |
| jobs: | |
| test: | |
| name: test (${{ matrix.os }}, py-${{ matrix.python_version }}) | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ['ubuntu-22.04', windows-latest, macOS-latest] | |
| python_version: ['3.8'] | |
| include: | |
| # Experimental: Python 3.9 | |
| # Works fine, commented out because mostly covered (at least installing/building deps) by the typecheck job | |
| # See issue: https://github.com/NeuroTechX/eeg-notebooks/issues/50 | |
| #- os: ubuntu-latest | |
| # python_version: 3.9 | |
| # Check 3.10 for future-proofing | |
| - os: ubuntu-22.04 | |
| python_version: '3.10' | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python_version }} | |
| # Not needed if pywinhook is installed from wheels | |
| #- name: Install swig | |
| # if: "startsWith(runner.os, 'windows')" | |
| # run: | | |
| # (New-Object System.Net.WebClient).DownloadFile("http://prdownloads.sourceforge.net/swig/swigwin-4.0.1.zip","swigwin-4.0.1.zip"); | |
| # Expand-Archive .\swigwin-4.0.1.zip .; | |
| # echo "$((Get-Item .).FullName)/swigwin-4.0.1" | Out-File -FilePath $env:GITHUB_PATH -Encoding utf8 -Append | |
| - name: Install APT dependencies | |
| if: "startsWith(runner.os, 'Linux')" | |
| run: | | |
| make install-deps-apt | |
| - name: Upgrade pip | |
| run: | | |
| python -m pip install --upgrade pip wheel | |
| - name: Install Linux dependencies | |
| if: "startsWith(runner.os, 'Linux')" | |
| run: | | |
| make install-deps-wxpython | |
| - name: Install conda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| environment-file: environments/eeg-expy-full.yml | |
| auto-activate-base: true | |
| python-version: 3.8 | |
| activate-environment: eeg-expy-full | |
| channels: conda-forge | |
| miniconda-version: "latest" | |
| - name: Install dependencies via conda | |
| shell: bash -el {0} | |
| run: | | |
| conda info | |
| conda activate eeg-expy-full | |
| - name: Run eegnb install test | |
| shell: bash -el {0} | |
| run: | | |
| if [ "$RUNNER_OS" == "Linux" ]; then | |
| Xvfb :0 -screen 0 1024x768x24 -ac +extension GLX +render -noreset &> xvfb.log & | |
| export DISPLAY=:0 | |
| fi | |
| eegnb --help | |
| eegnb runexp --help | |
| - name: Run examples with coverage | |
| shell: bash -el {0} | |
| run: | | |
| if [ "$RUNNER_OS" == "Linux" ]; then | |
| Xvfb :0 -screen 0 1024x768x24 -ac +extension GLX +render -noreset &> xvfb.log & | |
| export DISPLAY=:0 | |
| fi | |
| make test PYTEST_ARGS="--ignore=tests/test_run_experiments.py" | |
| typecheck: | |
| name: typecheck (${{ matrix.os }}, py-${{ matrix.python_version }}) | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ['ubuntu-22.04'] | |
| python_version: [3.9] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v1 | |
| with: | |
| python-version: ${{ matrix.python_version }} | |
| - name: Install APT dependencies | |
| if: "startsWith(runner.os, 'Linux')" | |
| run: | | |
| make install-deps-apt | |
| - name: Upgrade pip | |
| run: | | |
| python -m pip install --upgrade pip wheel | |
| - name: Install Linux dependencies | |
| if: "startsWith(runner.os, 'Linux')" | |
| run: | | |
| make install-deps-wxpython | |
| - name: Install dependencies | |
| run: | | |
| make build | |
| - name: Typecheck | |
| run: | | |
| make typecheck |