v1.2.2

Features

• Allow selection of alternate correlation method (Pearson, Spearman, Kendall) and exact‑p‑value option
• Add CI workflow to test the containerized Snakemake pipeline with Apptainer
• Automatically build and push Docker images on tagged releases
• Update R environment and container definitions

Bug fixes

• Suppress initial input‑function messages for cleaner logs for Snakemake v9+
• Remove duplicate legends on M-L tree
• Update p‑value extraction in SNP description reports to reflect the model output

Documentation and code formatting

• Clarify GISAID EpiCoV access caveats and workarounds in the context‑dataset docs
• Rename and update SLURM profile examples for compatibility with Snakemake v8+
• Improve style of the report rule shell directive
• Update CI badge layout

Full Changelog: v1.2.1...v1.2.2