MONAI support #33
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MONAI support #33
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Codecov Report
@@ Coverage Diff @@
## main #33 +/- ##
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- Coverage 66.81% 65.21% -1.60%
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Files 8 8
Lines 2091 2139 +48
Branches 338 361 +23
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- Hits 1397 1395 -2
- Misses 598 640 +42
- Partials 96 104 +8
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This PR allows for use of the metrics in
pairwise_measures.pyto be used from MONAI, in particular it enables the use of a batch dimension and a smoothing parameter. Some small modifications have also been made in some places to make the code slightly more efficient (e.g, one-hot encode only once inMultiClassPairwiseMeasures.weighted_cohens_kappa, repeated computations removed fromMultiClassPairwiseMeasures.normalised_expected_cost., etc). All unit tests pass, and the smoothing parameters is disabled by default; that is, the output of the metrics have not changed. With this PR integrated into the package, the wrapper on the MONAI side (for the pairwise metrics) should be easy to implement :)