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Investigate possibility and usefulness of creating a Napari plugin for PyOPIA

help wantedExtra attention is neededExtra attention is needed

priority-medium

Status: Open.

Task

#357 In SINTEF/pyopia;

· nepstad opened on Oct 21, 2025

Add option to print version

Status: Open.

#356 In SINTEF/pyopia;

· nordam opened on Sep 18, 2025

Use Pooch to handle file downloads in exampledata.py

patch / enhancementimproved functionality or patch indented for changes that require bumping only the PATCH numberimproved functionality or patch indented for changes that require bumping only the PATCH number

Status: Open.

Feature

#352 In SINTEF/pyopia;

· nepstad opened on Sep 8, 2025

Change to Ruff for linting and code auto-formatting

patch / enhancementimproved functionality or patch indented for changes that require bumping only the PATCH numberimproved functionality or patch indented for changes that require bumping only the PATCH number

Status: Open.

Feature

#351 In SINTEF/pyopia;

· nepstad opened on Sep 8, 2025

Using incorrectly formatted auxilliary data file makes pyopia skip image with non-useful log message

Status: Open.

Feature

#350 In SINTEF/pyopia;

· nordam opened on Aug 7, 2025

Add metadata to image_stats variables

Status: Open.

#349 In SINTEF/pyopia;

· nepstad opened on Jul 9, 2025

image2blackwhite_accurate is not possible to use in high-level processing

patch / enhancementimproved functionality or patch indented for changes that require bumping only the PATCH numberimproved functionality or patch indented for changes that require bumping only the PATCH number

Status: Open.

Bug

#338 In SINTEF/pyopia;

· emlynjdavies opened on Apr 3, 2025

Add export step in PyOPIA for EcoTaxa data bundle import

minor new featureintended for changes that require bumping MINOR version. New features that are backwards-compatible.intended for changes that require bumping MINOR version. New features that are backwards-compatible.

Status: Open.

Feature

#332 In SINTEF/pyopia;

· nepstad opened on Mar 7, 2025

· 

DTO-BioFlow

Logging handling is not multiprocess safe

bugSomething isn't workingSomething isn't working

patch / enhancementimproved functionality or patch indented for changes that require bumping only the PATCH numberimproved functionality or patch indented for changes that require bumping only the PATCH number

priority-low

Status: Open.

#331 In SINTEF/pyopia;

· nepstad opened on Nov 4, 2024

Unable to download silcam_database.zip from exampledata.py

bugSomething isn't workingSomething isn't working

Status: Open.

Bug

#329 In SINTEF/pyopia;

· arsalanmstn opened on Oct 18, 2024

Add more info to error messages in log

Status: Open.

#310 In SINTEF/pyopia;

· nordam opened on Sep 22, 2024

docstring for SilCamLoad image_format is lowercase, but should be upper case string inputs

bugSomething isn't workingSomething isn't working

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#306 In SINTEF/pyopia;

· emlynjdavies opened on Sep 20, 2024