tissueVascularizationMeasure

This is a Groovy script to work within QuPath environment to identify vascular areas and measure them on different channels

Download tissueVascularizationMeasure.groovy script

1. Go to the GitHub repository
2. Click on tissueVascularizationMeasure.groovy>Download raw file
3. The repo will be found at Downloads directory.

Running tissueVascularizationMeasure.groovy through Windows Command Line on a Single Image

"QuPath-0.4.3 (console).exe" script "absolutePath/to/script.groovy" -i="absolutePath/to/image"

Running tissueVascularizationMeasure.groovy through Windows Command Line on a Project

"QuPath-0.4.3 (console).exe" script "absolutePath/to/script.groovy" -p="absolutePath/to/project.qpproj"

Parameters Explanation:

• script "path/to/script.groovy" : Apply the script to the specified image.
• -i,--image="absolutePath/to/image" : Apply the script to the specified image
• -p,--project="absolutePath/to/project.qpproj": Path to a project file (.qpproj)

Running through QuPath GUI

1. Navigate to reach Script Editor tool:

   • By writing Show script editor on the search tool or by Automate>Show script editor

   

2. Show script editor tool will be displayed:

3. Open the groovy script tissueVascularizationMeasure.groovy by File>Open...>tissueVascularizationMeasure.groovy

   

4. Press Run button to compile the script.