I am a Project Manager of the European Galaxy Team at the University of Freiburg, working as part of the EuroScienceGateway project.
My academic background is in evolutionary biology, with a PhD focused on the terrestrialization of land plants. I investigated gene expression patterns in land plants and their closest algal relatives, Zygnematophyceae, using co-expression network analysis.
I have a diverse programming background. I began with C++, building small projects to learn core concepts, and later expanded into Python for data analysisโdeveloping projects such as a chatroom and a simple multiplayer game. During my PhD, I primarily used R and Bash, leveraging Snakemake to orchestrate workflows on HPC servers and performing statistical analyses locally in R.
Popular repositories Loading
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enrichment_analysis_for_non_model_organism
enrichment_analysis_for_non_model_organism PublicIn this repo, I explain how can we use clusterProfiler and Tidyverse to perform (GO or KEGG) enrichment analysis in R.
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rnaseq_quantification_kallisto_pipeline
rnaseq_quantification_kallisto_pipeline PublicThis it the pipeline I use frequently to perform QC, filtering and trimming, and quantification of raw RNA-Seq reads.
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Response_to_a_gradient_of_environmental_cues_in_mesotaenium_endlicherianum
Response_to_a_gradient_of_environmental_cues_in_mesotaenium_endlicherianum PublicForked from deVries-lab/Response_to_a_gradient_of_environmental_cues_in_mesotaenium_endlicherianum
In this repository we deployed the codes we used to perform bioinformatic analyses for the paper "Response_to_a_gradient_of_environmental_cues_in_mesotaenium_endlicherianum"
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high-throughput_blast
high-throughput_blast PublicHere, I explain how to parallelize sequence similarity search using blast (or anything similar), if you have access to HPC or a big computer.
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minimal-chatroom
minimal-chatroom PublicMy first project for the advanced programming course - a minimal chatroom that has server side and client side implemented in c++ and Qt framework
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agar.io
agar.io PublicMy second project for the advanced programming course - Agar.io is a game that has server side and client side implemented in c++ and Qt framework
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