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dhanyashri-g/README.md

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๐Ÿงฐ Technical & Soft Skills

๐Ÿงช Bioinformatics Skills

๐Ÿง  Health Informatics & Technical Skills

๐Ÿ’ผ Soft Skills


๐Ÿงฐ Software & Tools

๐Ÿ–ฅ๏ธ Bioinformatics Software & Tools

ADMETlab AlphaFold AutoDock BCFtools BLAST BindingDB BioAssay BioCyc BioPerl Biopython CASTp CTD CTDbase CellDesigner ChEMBL ChimeraX Clustal Omega Cytoscape DAVID DDBJ DESeq2 DGIdb DepMap DiGePred Discovery Studio Drug Gene Interaction Database DrugBank EMBL-EBI EMBOSS Enrichr Ensembl Ensembl Compara European Galaxy FDA FuncSimMat GATK GDC Data Portal GEMINI GENCODE GENIE3 GEO GEO2R GEOexplore GPCRdb GROMACS Galaxy GenBank GenePattern GtoPdb HADDOCK Human Protein Atlas ICGC IEDB Analysis Resource IFNepitope InterPro Jmol KASS KEGG KEGG Mapper KMplot MATLAB MODELLER Metascape MyCancerGenome NCBI Needle OCHEM ORCS OncoKB OrthoFinder PBIT PDB PPA-Pred PRISM PatchDock PathVisio Pfam PharmGKB PockDrug ProTox-II PrognoScan PubChem PubMed PyMol PyRx REDCap Rasmol Reactome SEA SMACC STRING Samtools SeqBuilder Pro Swiss-Model SwissADME SwissDock SwissProt SwissTargetPrediction ToppGene ToxCast Toxtree TrEMBL UCSC Genome Browser UniProt VMD VaxiJen Virulent ZDOCK ZINC15

๐Ÿ–ฅ๏ธ Other Software & Tools

Tableau Power BI Microsoft Office Excel PowerPoint Microsoft Teams Google Workspace Airtable Canva Adobe BioRender SPSS Statistics Pivot Tables AI Tools


๐Ÿ’ป Programming Languages

Beginner Python C++ SQL HTML Perl Java


๐Ÿ“„ Publications

๐Ÿงช Comprehensive Insights into Monkeypox (mpox): Recent Advances in Epidemiology, Diagnostic Approaches and Therapeutic Strategies

Summary: A comprehensive review of Monkeypox (mpox) covering recent breakthroughs in epidemiology, diagnostic strategies, and emerging therapeutics. This work contributes to better preparedness and global surveillance.

MDPI Q1 Year๐Ÿ“Ž DOI: 10.3390/pathogens14010001 โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”

๐Ÿงฌ Long COVID: G Protein-Coupled Receptors (GPCRs) Associated Genes and Pathways as a Promising Therapeutic Potential Through Computational Analysis

Summary: Explores the involvement of GPCRs in Long COVID pathophysiology using in silico transcriptomic and pathway enrichment analyses. Highlights new therapeutic angles and drug repositioning opportunities.

Preprint Final Year Project Year ๐Ÿ“Ž DOI: 10.20944/preprints202408.0558.v1 โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”โ”

๐Ÿค– Deep Learning in Computational Biology: Advancements, Challenges, and Future Outlook

Summary: A visionary overview of how deep learning is revolutionizing computational biology โ€” from structure prediction and functional annotation to drug discovery. Tackles the real-world challenges and future research horizons.

arXiv Q1 Year ๐Ÿ“Ž DOI: 10.48550/arXiv.2310.03086


๐Ÿงฌ Academic Research Projects

๐Ÿ”ฌ Monkeypox Protein Structure ๐Ÿ’‰ Vaccine Design (Monkeypox) ๐Ÿงช Rheumatoid Arthritis Analysis
Tools: UniProt, PubChem, IGEMDOCK
Focus: ๐Ÿงฌ Molecular Docking
Docking
View Repo
Tools: Uniprot, VaxiJen, B/T-cell, Ifnepitope, PatchDock
Focus: ๐Ÿ’‰ Epitope-Based Vaccine
Vaccine
View Repo
Tools: GEO2R, Functional Enrichment, PPI Network, Cytoscape
Focus: ๐Ÿ” Hub Gene Detection
RA
View Repo
๐Ÿง  Pathology System Design ๐Ÿฆ  Novel Drug Target โ€“ H. pylori ๐Ÿ’Š COVID-19 Drug Analysis
โš™๏ธ Informatics system design
Focus: ๐Ÿ’พ Data Architecture
System
View Repo
Tools: European Galaxy, KEGG, PSORTb, PBIT, KASS
Focus: Antimicrobial Resistance Bacteria H. pylori
AMR
View Repo
Tools: SMACC, Digep-Pred, CTD, SwissADME, Enrichr, Cytoscape
Focus: ๐Ÿ”ฌ Systems biology + cheminformatics
COVID
View Repo

๐Ÿ† Achievements

Achievement Certificate
๐Ÿฅ‡ Best Poster Presenter
๐Ÿ“ INCOBIOM 2024
๐Ÿ… Best Poster Award
๐Ÿ’ก Presented award-winning research in computational biology and precision medicine.
Certificate 1
๐ŸŽ“ Deanโ€™s List Award
๐Ÿซ University Academic Excellence
๐Ÿ“… 2022, 2023, 2024
๐Ÿ… Maintained consistent academic excellence across 3 years.
Certificate 2

๐Ÿงฌ Scientific Participation

๐ŸŒ INCOBIOM 2024
International Conference on Computational Biology & Precision Medicine
๐Ÿ“… 2024
๐Ÿงฌ Participated in bioinformatics & precision medicine.
๐Ÿงช iMPaCHS 2024
Medical, Pharmaceutical, Cosmeceutical & Health Symposium
๐Ÿ“… 2024
๐Ÿ’Š Focused on pharma, health, cosmeceuticals.
๐ŸŒฑ Biotech & EnviroConf 2023
Biotech, Chemical & Environmental Sciences
๐Ÿ“… 2023
๐ŸŒฟ Focused on sustainability & biotech innovation.

๐Ÿงช Professional Development

๐Ÿ”ฌ Whole Genome Sequencing & AMR Profiling
Instructor
Skills AMR Pathogen
Type
๐Ÿฆ  Microbial Pathogen Database & Resources
Instructor
Skills Tools Resources
Type
๐Ÿงฌ NGS Microbial Data Analysis
Event
Skills Data Genomics
Type

๐ŸŒ Languages

๐Ÿด English ๐Ÿ‡ฒ๐Ÿ‡พ Bahasa Melayu ๐Ÿ‡ฎ๐Ÿ‡ณ Tamil
๐ŸŸข Fluent
Professional Fluency in Speaking & Writing
๐ŸŸข Fluent
Professional Fluency in Speaking & Writing
๐ŸŸข Fluent (Native)
Professional Fluency in Speaking

๐Ÿ’Œ Let's Connect!

Letโ€™s connect, collaborate, or just geek out over some genes!

LinkedIn ORCID Email

๐Ÿ’ก"Science + Data + a Smile = Endless Possibilities."๐Ÿ’ก

Pinned Loading

  1. long-covid-therapeutics long-covid-therapeutics Public

    A project exploring G-protein-coupled receptors (GPCRs) as therapeutic targets for Long COVID using computational analysis and drug repurposing tools.

    1

  2. variant-analysis-pipeline variant-analysis-pipeline Public

    Variant analysis pipeline using Python - demo

    Python 1

  3. tcga-rnaseq-analysis tcga-rnaseq-analysis Public

    A workflow for NGS analysis on RNA-seq samples

    Python 1

  4. sars-cov2-dashboard sars-cov2-dashboard Public

    A Streamlit dashboard to explore SARS-CoV-2 genomic data

    Python