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Update coreograph so that it writes tiled pyramidal OME-TIFF core images

tool update

Status: Open.

#98 In goeckslab/tools-mti;

· CameronFRWatson opened on Apr 29, 2025

Unify test data across tools

enhancementNew feature or requestNew feature or request

Status: Open.

#97 In goeckslab/tools-mti;

· CameronFRWatson opened on Mar 20, 2025

Need to catch NaN values in Basic Illumination standard output as tool failure

Status: Open.

#96 In goeckslab/tools-mti;

· CameronFRWatson opened on Mar 20, 2025

Add Zarr datatype, visualizations, and remote data support to imaging tools

Status: Open.

#93 In goeckslab/tools-mti;

· CameronFRWatson opened on Feb 14, 2025

Add better image assertions to tool tests when we update to Galaxy v24

Status: Open.

#72 In goeckslab/tools-mti;

· CameronFRWatson opened on Jun 4, 2024

Dynamically determine chunk size for background subtraction tool

enhancementNew feature or requestNew feature or request

low priority

Status: Open.

#70 In goeckslab/tools-mti;

· CameronFRWatson opened on May 30, 2024

Expose random seed parameter to user args for analytical tools

Status: Open.

#52 In goeckslab/tools-mti;

· CameronFRWatson opened on Apr 24, 2023

data_column for specifying input column names and tabular metadata files for tools

Status: Open.

#44 In goeckslab/tools-mti;

· CameronFRWatson opened on Sep 26, 2022

Support for multiple supplementary masks in quantification tool

low priority

Status: Open.

#40 In goeckslab/tools-mti;

· CameronFRWatson opened on Sep 9, 2022

Autogating

Status: Open.

#22 In goeckslab/tools-mti;

· alliecreason opened on Jul 5, 2022

Create TMA map of cores

Status: Open.

#19 In goeckslab/tools-mti;

· alliecreason opened on Jul 5, 2022