Remove unnecessary chex dependency #36
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| name: Continuous Integration | |
| on: | |
| # Trigger the workflow on push or pull request, only on the main branch. | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| name: "build ${{ matrix.name-prefix }} (py ${{ matrix.python-version }} on ${{ matrix.os }})" | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| include: | |
| - name-prefix: "all tests" | |
| python-version: '3.11' | |
| os: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get install -y hmmer | |
| pip install --upgrade pip | |
| pip install -r dev-requirements.txt | |
| pip install --no-deps . | |
| build_data | |
| - name: Run CPU-only tests | |
| run: | | |
| python run_alphafold_data_test.py |