EasyPQP 0.1.53

What's Changed

• Add diannpqp flag to output DIA-NN2-compatible speclibs #120

Full Changelog: 0.1.52...0.1.53

EasyPQP 0.1.52

What's Changed

• Update the UniMod to the version of date 2024-08-12 11:33
• Do not add the amino acid mass to the modification mass because Skyline requires that.

Full Changelog: 0.1.51...0.1.52

EasyPQP 0.1.51

What's Changed

• Properly parse IM from idXML

Full Changelog: 0.1.50...0.1.51

EasyPQP 0.1.50

What's Changed

• Fix a bug caused by the mixture of UniProt and non-UniProt headers
• Fix incorrect fragment ion generation for N-glyco+hexnac mode
• Fix a bug that misses many PSMs in the library
• Fix a bug in PSM conversion when calculating mass of modifications not matched to UniMod
• Prevent intermixing fragments from peptide positional isomers (with same precursor m/z) in the library
• Fix idxml parsing
• Other small bugfixes and improvements

Full Changelog: 0.1.49...0.1.50

EasyPQP 0.1.49

What's Changed

• Fix bug processing spectrum rank in psm conversion
• Fix a bug caused by the changes in Pandas 2.0
• Print more messages to help troubleshooting

Full Changelog: 0.1.48...0.1.49

EasyPQP 0.1.48

What's Changed

• [FEATURE] Add BJXZ amino acids to the amino acid mass list.

Full Changelog: 0.1.47...0.1.48

EasyPQP 0.1.47

What's Changed

• [FEATURE] Generate canonical set of protein identifiers by @grosenberger in #111

Full Changelog: 0.1.46...0.1.47

EasyPQP 0.1.46

What's Changed

• Fix a crash in regular (nonlabile) psm.tsv conversion

Full Changelog: 0.1.45...0.1.46

EasyPQP 0.1.45

What's Changed

• Set minimum version for matplotlib
• Fix the numpy version to not install numpy 2.x

Full Changelog: 0.1.44...0.1.45

EasyPQP 0.1.44

What's Changed

• Fix a bug using probability as pep.
• Change the PeptideProphet Probability to Probability
• Add glycan q-value filter option to PTM conversion

Full Changelog: 0.1.43...0.1.44