Develop nico

.gitignore

@@ -1,8 +1,12 @@
 *.root
 *.o
 *.swp
+*.root
+*.log
 .depend
 leaf/DataModelRootDict*
 leaf/HKAstroAnalysis.*
 leaf/DataModel
 lib/*
+job.sh
+Config.sh

example/ConfigExample.sh

@@ -0,0 +1,32 @@
+#!/bin/bash +x
+
+# This script is used to set up the environment for running LEAF
+
+export HitTimeLimitsNegative=-4
+export HitTimeLimitsPositive=8
+export SearchVtxStep=300
+export SearchVtxTolerance=20
+export maxHitsAngle=190
+export N_Neighbors=5
+export maxDistanceToNeighbors=6800
+
+export STimePDFLimitsQueueNegative=-3;
+export STimePDFLimitsQueuePositive=4;
+export STimePDFLimitsQueueNegative_fullTimeWindow=0;
+export STimePDFLimitsQueuePositive_fullTimeWindow=0;
+export TimeWindowSizeFull=1500;
+export Averaging=20; # Number of points we used to average the vertex on.
+
+export MinimizeLimitsNegative=-700;
+export MinimizeLimitsPositive=1000;
+
+export IntegrationTimeWindow=50;
+
+export DirTolerance=30;
+
+export StepByStep=false; # Step by step mode was not test and is not supported by multithreading
+export UseDirectionality=false;
+export HighEnergy=false;
+export DoubleNLL=true;
+export Limit_mPMT=true;
+export DirTakeAll=false;

example/GNUmakefile

@@ -10,19 +10,23 @@ CXXFLAGS += $(shell root-config --cflags)
 CXXFLAGS += '-fPIC' -std=c++11 -Wall -Wpedantic -Wno-long-long
 
 INCFLAGS = -I. -I$(shell root-config --incdir)
-INCFLAGS += -I$(WCSIMDIR)/include
-INCFLAGS += -I$(BONSAIDIR)/bonsai
+INCFLAGS += -I$(WCSIM_BUILD_DIR)/include/WCSim
+# INCFLAGS += -I$(WCSIMDIR)/include
+# INCFLAGS += -I$(BONSAIDIR)/bonsai
 INCFLAGS += -I$(LEAFDIR)/leaf
 INCFLAGS += -I$(LEAFDIR)/leaf/DataModel
 
-LIBS += -L${WCSIMDIR} -lWCSimRoot 
+# LIBS += -L${WCSIMDIR} -lWCSimRoot 
+LIBS += -L${WCSIM_BUILD_DIR}/lib -lWCSimRoot
 LIBS += $(shell root-config --libs) -lMinuit 
-LIBS_BONSAI += -L${BONSAIDIR} -lWCSimBonsai
+# LIBS_BONSAI += -L${BONSAIDIR} -lWCSimBonsai
 LIBS_LEAF += -L${LEAFDIR}/lib -lDataModelLite -lHKManager -lLEAF #-lHKAstroAnalysis 
 
 
 OBJECT = analysis
 
+CXXFLAGS += -std=c++17
+
 all: $(OBJECT)
 
 analysis: analysis.o