ArtifactDB-formatted ZIP files

SingleCellExperiment objects saved into ArtifactDB-formatted directories and archived into ZIP files.

These are only provided for back-compatibility, most applications should be using the alabaster format instead.

alabaster-formatted ZIP files

SingleCellExperiment objects saved into alabaster-formatted directories and archived into ZIP files.

10X CRISPR screening artifacts

Files generated from 10x-crispr/download.sh. Contains a small 10X CRISPR screening dataset in various formats. Also contains a subset of the data for faster unit testing.

10X PBMC artifacts

Files generated from 10x-pbmc/generate.R. Contains the 10X PBMC datasets in various formats.

10X immune profiling artifacts

Files generated from 10x-immune/download.sh. Contains a small 10X immune profiling dataset in various formats. Also contains a smaller subset of the dataset (first 3000 cells) for testing purposes.

Zilionis lung artifacts

Files generated from zilionis-lung/generate.R. Contains the Zilionis scRNA-seq lung dataset in several formats.

Zeisel brain artifacts

Files generated from zeisel-brain/generate.R. Contains the Zeisel scRNA-seq brain dataset in several formats. A subset of the top 1000 genes is also provided for use in CI/CD tests.

Paul HSC artifacts

Files generated from paul-hsc/generate.R. Contains the Paul scRNA-seq HSC dataset in several formats.

Ernst spermatogenesis artifacts

Files generated from ernst-sperm/generate.R. Contains the Ernst spermatogenesis scRNA-seq brain dataset in several formats.

Bacher T cell artifacts

Files generated from bacher-tcell/generate.R. Contains the Bacher scRNA-seq T cell dataset in several formats.