koellelab
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betabinomial_bottleneck
betabinomial_bottleneck PublicCode for estimating transmission bottleneck sizes using the betabinomial approach
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segregating-sites
segregating-sites PublicCode for epidemiological inference using segregating site trajectories
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sarscov2_nb_reanalysis
sarscov2_nb_reanalysis PublicReanalysis of the SARS CoV-2 bottleneck estimates presented in Popa & Genger et al. Science Translational Medicine 2020
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Repositories
- IAV_beta_with_spikes_Ne Public
This repository applies Tataru et al.'s beta-with-spike model to influenza A virus intrahost Single Nucleotide Variant frequencies to estimate within-host effective viral population sizes.
koellelab/IAV_beta_with_spikes_Ne’s past year of commit activity - norwalk_virus_Neff Public
This repository contains Matlab code to estimate the effective within-host population size of Norwalk virus in experimental human infections.
koellelab/norwalk_virus_Neff’s past year of commit activity - nbclonal Public
koellelab/nbclonal’s past year of commit activity - sarscov2_nb_reanalysis Public
Reanalysis of the SARS CoV-2 bottleneck estimates presented in Popa & Genger et al. Science Translational Medicine 2020
koellelab/sarscov2_nb_reanalysis’s past year of commit activity - withinhost_fitnessInference Public
koellelab/withinhost_fitnessInference’s past year of commit activity - betabinomial_bottleneck Public
Code for estimating transmission bottleneck sizes using the betabinomial approach
koellelab/betabinomial_bottleneck’s past year of commit activity
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