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MalariaGEN

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  1. malariagen-data-python malariagen-data-python Public

    Analyse MalariaGEN data from Python

    Jupyter Notebook 18 39

  2. pipelines pipelines Public

    Pipelines for processing malaria parasite and mosquito genome sequence data.

    WDL 14 15

  3. gsoc-mosquito-taxon-classifier gsoc-mosquito-taxon-classifier Public

    Mosquito taxon classifier - GSoC

    10 8

  4. vector-data vector-data Public

    Documentation, discussion forum and issue tracker for malaria vector genomic data released by MalariaGEN.

    7 6

  5. GeneticReportCard GeneticReportCard Public

    Genetic Report Card code

    Java 4 2

  6. ano-spp ano-spp Public

    A targeted amplicon sequencing panel to simultaneously identify mosquito species and Plasmodium presence across the entire Anopheles genus

    Jupyter Notebook 3

Repositories

Showing 10 of 57 repositories
  • vector-data Public

    Documentation, discussion forum and issue tracker for malaria vector genomic data released by MalariaGEN.

    malariagen/vector-data’s past year of commit activity
    7 6 15 0 Updated Oct 23, 2025
  • malariagen-data-python Public

    Analyse MalariaGEN data from Python

    malariagen/malariagen-data-python’s past year of commit activity
    Jupyter Notebook 18 MIT 39 93 (1 issue needs help) 18 Updated Oct 21, 2025
  • mgenv Public

    Repository with installation scripts and environment definitions for conda and texlive, for standardising environments across the MalariaGEN resource centre team.

    malariagen/mgenv’s past year of commit activity
    Shell 2 MIT 6 4 1 Updated Oct 13, 2025
  • vector_gwas_exploration Public
    malariagen/vector_gwas_exploration’s past year of commit activity
    Jupyter Notebook 0 0 0 2 Updated Sep 25, 2025
  • vobs-updates Public

    Minisite with technical updates from the Malaria Vector Genome Observatory.

    malariagen/vobs-updates’s past year of commit activity
    Jupyter Notebook 0 CC0-1.0 1 8 0 Updated Sep 22, 2025
  • vector-taxon-classifier-prediction Public

    Mosquito Species Prediction Library

    malariagen/vector-taxon-classifier-prediction’s past year of commit activity
    Python 0 1 0 0 Updated Sep 12, 2025
  • malariagen-pf8-cnv-calling Public

    For making Pf8's copy number variation (CNV) calls.

    malariagen/malariagen-pf8-cnv-calling’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Aug 21, 2025
  • malariagen-pf8-snp-indel-calling Public

    For making Pf8's SNP and indel variant calls.

    malariagen/malariagen-pf8-snp-indel-calling’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Aug 15, 2025
  • anospp-analysis Public

    Python package for ANOSPP data analysis

    malariagen/anospp-analysis’s past year of commit activity
    Python 0 MIT 1 1 0 Updated Jul 9, 2025
  • parasite-data Public

    Documentation, discussion forum and issue tracker for malaria parasite genomic data released by MalariaGEN.

    malariagen/parasite-data’s past year of commit activity
    0 0 4 0 Updated Jul 2, 2025
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