This repository is now read-only and will no longer accept Issues or Pull Requests. I’ve archived it mainly to prevent the automated GitHub bots from running on it—saving a bit of energy and avoiding unnecessary emails and notifications.
The code remains available here for historical reasons (you can also find it on the CD included with my PhD thesis at the University of Cambridge Library).
A heartfelt thank you to everyone who used Neurovisio (quite some time ago, to be honest). I hope it proved useful for your research, scientific communication, and maybe even gave you some fun along the way.
All the best, Michele
Neuronvisio is a Graphical User Interface for NEURON simulator environment. Neuronvisio connect with NEURON using the new python NEURON interface.
- 3D visualization of the model with the possibility to change it runtime
- Creation of vectors to record any variables present in the section
- Pylab integration to plot directly the result of the simulation
- Exploration of the timecourse of any variable among time using a color coded scale
- the GUI runs in its own thread so it's possible to use the console (integrated with IPython)
- automatically download and load models from ModelDB
More info are available on the homepage: https://neuronvisio.readthedocs.io
To create offline documentation similar to the one online you will need sphinx http://sphinx.pocoo.org/ installed.
Move in the doc directory:
cd docs
and then launch:
make html
In the _build/html directory you will have the online doc.
Update Changelog
Change version at neuronvisio/__init__.py
Change to same version in conda.recipe/meta.yaml
Commit everything
- Tag repo
python setup.py tag
- Upload to pipy and anaconda.org
PiPy:
python setup.py make_release
- Anaconda.org:
Got to anaconda.org and click on the website so the last build will be uploaded to the channel.