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National Microbiome Data Collaborative

National Microbiome Data Collaborative

57 followers
https://microbiomedata.org/
support@microbiomedata.org

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nmdc-schema nmdc-schema Public

National Microbiome Data Collaborative (NMDC) unified data model

Python 44 9
docs docs Public

User-facing, web-based documentation about the NMDC

Dockerfile 2 2

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Showing 10 of 82 repositories

nmdc-schema Public
National Microbiome Data Collaborative (NMDC) unified data model

microbiomedata/nmdc-schema’s past year of commit activity

Python 44 CC0-1.0 9 391 (1 issue needs help) 12 Updated Oct 8, 2025
metaMS Public
Metabolomics Workflows for GC- and LC-MS Metabolomics and LC-MS Lipidomics

microbiomedata/metaMS’s past year of commit activity

Python 6 BSD-2-Clause 0 1 0 Updated Oct 7, 2025
issues Public
public repo for issues related to NMDC work

microbiomedata/issues’s past year of commit activity

Jupyter Notebook 2 1 313 2 Updated Oct 7, 2025
metadata-for-user-facility-template-transformations Public
CLI tool to convert metadata submissions from the NMDC submission portal to user facility Excel templates

microbiomedata/metadata-for-user-facility-template-transformations’s past year of commit activity

Python 0 0 15 1 Updated Oct 7, 2025
submission-schema Public

microbiomedata/submission-schema’s past year of commit activity

Python 1 MIT 2 28 2 Updated Oct 7, 2025
nmdc_mass_spectrometry_metadata_generation Public
Mass spectrometry metadata generation

microbiomedata/nmdc_mass_spectrometry_metadata_generation’s past year of commit activity

Python 2 0 4 3 Updated Oct 7, 2025
DataHarmonizer Public Forked from cidgoh/DataHarmonizer

microbiomedata/DataHarmonizer’s past year of commit activity

JavaScript 1 MIT 31 0 0 Updated Oct 7, 2025
nmdc-server Public
Data portal client and server for NMDC.

microbiomedata/nmdc-server’s past year of commit activity

Python 12 0 116 17 Updated Oct 7, 2025
nmdc-runtime Public
Runtime system for NMDC data management and orchestration

microbiomedata/nmdc-runtime’s past year of commit activity

Python 7 6 116 (3 issues need help) 8 Updated Oct 7, 2025
enviroMS Public

microbiomedata/enviroMS’s past year of commit activity

Python 5 BSD-2-Clause 0 3 0 Updated Oct 6, 2025

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