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Pull requests: nf-core/modules

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Pull requests list

fix gatkspark/applybqsr
#8900 opened Aug 14, 2025 by maxulysse Loading…
17 tasks
Add drep/dereplicate
#8897 opened Aug 14, 2025 by jfy133 Loading…
17 tasks
1
add writing index option to samtools sort
#8895 opened Aug 13, 2025 by ljwharbers Loading…
2 of 17 tasks
1
Decoupler
#8893 opened Aug 12, 2025 by antoniasaracco Loading…
17 tasks
13
Lint modules for sarek
#8891 opened Aug 12, 2025 by maxulysse Loading…
17 tasks
1
Adding cnaqc tool module
#8890 opened Aug 12, 2025 by vvvirgy Loading…
17 tasks
1
12
Add another csv file as output
#8878 opened Aug 11, 2025 by LuisHeinzlmeier Loading…
2
Add coverm/genome
#8874 opened Aug 11, 2025 by vinisalazar Loading…
11 of 17 tasks
31
Add zstd to untar image
#8866 opened Aug 8, 2025 by JoseEspinosa • Draft
4 tasks done
New Module: Pharmcat
#8855 opened Aug 6, 2025 by rkmishra3893 Loading…
13 of 14 tasks
25
Add FASTQ_ALIGN_CONVERT_STAR_SAMTOOLS subworkflow
#8852 opened Aug 5, 2025 by delfiterradas Loading…
14 of 17 tasks
1
@delfiterradas
1
Add new subworkflow: tiff_segmentation_vpt new subworkflow Ready for Review
#8849 opened Aug 5, 2025 by mcmero Loading…
13 of 17 tasks
1
chore(deps): update biocontainers/genomad docker tag to v1.11.1
#8841 opened Aug 1, 2025 by renovate bot Loading…
2 tasks
chore(deps): update biocontainers/eggnog-mapper docker tag to v2.1.13
#8840 opened Aug 1, 2025 by renovate bot Loading…
2 tasks
chore(deps): update biocontainers/cooler docker tag to v0.10.4
#8839 opened Aug 1, 2025 by renovate bot Loading…
2 tasks
add estimatemutationalburden as module
#8837 opened Jul 31, 2025 by famosab Loading…
17 tasks
2
Add dragen germline module
#8823 opened Jul 29, 2025 by marrip • Draft
7 of 17 tasks
@marrip
17
Modernize arm profiles
#8821 opened Jul 28, 2025 by edmundmiller Loading…
@edmundmiller
POC: declare ext variable defaults as directives
#8808 opened Jul 24, 2025 by nvnieuwk • Draft
add viber module new module Adding a new module
#8797 opened Jul 21, 2025 by giorgiagandolfi Loading…
17 tasks
1
10
Update mobster module update module
#8791 opened Jul 21, 2025 by elena-buscaroli Loading…
4 of 17 tasks
1
6
BUSCO 6 update help wanted Extra attention is needed update module
#8781 opened Jul 16, 2025 by DLBPointon Loading…
4 of 6 tasks
@DLBPointon
9
Add new subworkflow VCF_FILTER_BCFTOOLS_FILTERVEP
#8777 opened Jul 16, 2025 by fellen31 Loading…
17 tasks
Update blastn module
#8765 opened Jul 10, 2025 by AnnaNoren Loading…
3 of 17 tasks
9
Container for FASTQSCREEN_FASTQSCREEN should include bismark
#8758 opened Jul 5, 2025 by fbnrst • Draft
10 of 12 tasks
1
4
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