JetBrains-Research

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206 repositories

opacus
Public
Training PyTorch models with differential privacy
Python
•
Apache License 2.0
•383•1•0•2•Updated Oct 25, 2025Oct 25, 2025
psiminer
Public archive
A Tool for Mining Rich Abstract Syntax Trees from Code
data-mining mining ml4code ml4se
Kotlin
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Apache License 2.0
•13•59•0•0•Updated Oct 24, 2025Oct 24, 2025
bus-factor-explorer
Public archive
A web app for exploring Bus Factor of GitHub projects by analyzing the commit history.
git mining-software-repositories truck-factor bus-factor
Jupyter Notebook
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MIT License
•2•20•0•0•Updated Oct 24, 2025Oct 24, 2025
TestSpark
Public
TestSpark - a plugin for generating unit tests. TestSpark natively integrates different AI-based test generation tools and techniques in the IDE. Started by SERG TU Delft. Currently under implementation by JetBrains Research (Software Testing Research) for research purposes.
Kotlin
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MIT License
•27•80•34•7•Updated Oct 23, 2025Oct 23, 2025
pubtrends
Public
Scientific literature explorer. Runs a Pubmed or Semantic Scholar search and allows user to explore high-level structure of result papers
pubmed bibliometrics semantic-scholar
Python
•
Apache License 2.0
•4•49•44•1•Updated Oct 22, 2025Oct 22, 2025
jbr
Public
JBR Genome Browser
genome-browser
Dockerfile
•1•11•106•0•Updated Oct 22, 2025Oct 22, 2025
peak-callers-analysis
Public
Datasets analysis and comparison scripts for SPAN semi-supervised peak analyzer
Jupyter Notebook
•0•0•0•0•Updated Oct 21, 2025Oct 21, 2025
rocqstar-agentic-system
Public
TypeScript
•0•7•0•0•Updated Oct 18, 2025Oct 18, 2025
tensorflow-federated
Public
An open-source framework for machine learning and other computations on decentralized data.
Python
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Apache License 2.0
•601•1•0•0•Updated Oct 17, 2025Oct 17, 2025
omnipeak
Public
A universal HMM-based peak caller capable of processing a broad range of ChIP-seq, ATAC-seq, and single-cell ATAC-seq datasets of different quality.
Kotlin
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MIT License
•0•2•1•0•Updated Oct 17, 2025Oct 17, 2025
chipseq-smk-pipeline
Public
ChIP-Seq processing pipeline on snakemake
visualization quality-control snakemake pipeline chip-seq atac-seq peak-calling
Python
•2•5•4•0•Updated Oct 16, 2025Oct 16, 2025
bioinf-commons
Public
Bioinformatics library in Kotlin
kotlin hmm bioinformatics progress methylation dataset fasta chip-seq sampling bed
Kotlin
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MIT License
•3•34•1•0•Updated Oct 16, 2025Oct 16, 2025
the-complexity-trap
Public
This repo accompanies the paper "The Complexity Trap: Simple Observation Masking Is as Efficient as LLM Summarization for Agent Context Management" presented at the Fourth Deep Learning for Code (DL4Code) workshop at NeurIPS 2025 and Tobias Lindenbauer's Master's Thesis.
agent efficiency context-engineering
Python
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MIT License
•0•1•0•0•Updated Oct 13, 2025Oct 13, 2025
rocqstar-rag
Public
BigRocq is a utility, that takes a Rocq (former Coq) project as input and uses domain knowladge to increase a number of theorems in the dataset by a significant factor.
coq code-generation dataset-augmentation rocq coq-lsp
TypeScript
•0•5•0•6•Updated Oct 8, 2025Oct 8, 2025
PIPer
Public
[DL4C @ NeurIPS 2025] On-Device Environment Setup via Online Reinforcement Learning
Python
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MIT License
•0•8•0•0•Updated Sep 30, 2025Sep 30, 2025
kinference
Public
Running ONNX models in vanilla Kotlin
kotlin machine-learning neural-networks onnx
Kotlin
•
Apache License 2.0
•8•194•6•1•Updated Sep 25, 2025Sep 25, 2025
fishbone
Public
Fishbone Ishikawa diagrams construction and visualising
JavaScript
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MIT License
•0•4•3•0•Updated Sep 24, 2025Sep 24, 2025
span
Public
SPAN Peak Analyzer
bioinformatics chip-seq peak-caller
Kotlin
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MIT License
•1•9•2•0•Updated Sep 24, 2025Sep 24, 2025
kinference-primitives
Public
Kotlin
•
Apache License 2.0
•0•5•0•1•Updated Sep 22, 2025Sep 22, 2025
EnvBench
Public
[DL4C @ ICLR 2025] A Benchmark for Automated Environment Setup
Python
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MIT License
•5•26•1•0•Updated Sep 17, 2025Sep 17, 2025
Mutassertix
Public
Kotlin
•0•0•0•0•Updated Sep 12, 2025Sep 12, 2025
tensorflow
Public
An Open Source Machine Learning Framework for Everyone
C++
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Apache License 2.0
•75k•0•0•0•Updated Sep 12, 2025Sep 12, 2025
differential-privacy
Public
Google's differential privacy libraries.
Go
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Apache License 2.0
•401•0•0•0•Updated Sep 2, 2025Sep 2, 2025
federated-compute-server-odp
Public
Java
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Apache License 2.0
•4•1•0•0•Updated Sep 1, 2025Sep 1, 2025
coordinator-services-and-shared-libraries
Public
Java
•
Apache License 2.0
•14•0•0•0•Updated Aug 19, 2025Aug 19, 2025
snakecharm
Public
Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.
python snakemake intellij bioinformatics-pipeline pycharm bioinformatics-tool intellij-plugins
Python
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MIT License
•8•62•123•2•Updated Aug 14, 2025Aug 14, 2025
kotlinx.fuzz
Public
Fuzzer for Kotlin libraries
Kotlin
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Apache License 2.0
•4•111•5•0•Updated Aug 7, 2025Aug 7, 2025
verified-cogen
Public
Repo for PLAN's verified code generation project
Rust
•3•12•0•3•Updated Aug 2, 2025Aug 2, 2025
viktor
Public
Efficient f64-only ndarray in Kotlin
Kotlin
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MIT License
•6•132•15•1•Updated Jul 21, 2025Jul 21, 2025
edm-workshop-tasks
Public
Kotlin
•0•0•0•0•Updated Jul 16, 2025Jul 16, 2025