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    215 repositories

    • nixpack

      Public
      nix+spack = nixpack (spanix?)
      Nix
      •
      MIT License
      •4•48•1•4•Updated Oct 26, 2025Oct 26, 2025

    • spack-packages

      Public
      Spack's community package recipes
      Python
      •
      Apache License 2.0
      •402•0•0•0•Updated Oct 26, 2025Oct 26, 2025

    • walnuts

      Public
      Within-orbit Adaptive Leapfrog No-U-Turn Sampler
      samplingstanmcmchmc
      C++
      •
      MIT License
      •1•21•14•2•Updated Oct 26, 2025Oct 26, 2025

    • cryojax-ensemble-optimization

      Public
      Python
      •
      MIT License
      •0•1•7•1•Updated Oct 24, 2025Oct 24, 2025

    • spack

      Public
      A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
      Python
      •
      Other
      •2.4k•2•0•14•Updated Oct 24, 2025Oct 24, 2025

    • RocketSHP

      Public
      Fast structural heterogeneity estimation
      Jupyter Notebook
      •
      MIT License
      •1•10•0•0•Updated Oct 24, 2025Oct 24, 2025

    • neurorse-workshops

      Public
      Built workshop materials for the NeuroRSE packages
      HTML
      •
      MIT License
      •0•0•0•0•Updated Oct 24, 2025Oct 24, 2025

    • ccn-software-sfn-2025

      Public
      Materials for CCN software workshop at SfN, Nov 2025
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 24, 2025Oct 24, 2025

    • neuroRSE

      Public
      Website for CCN's neuroRSE group
      CSS
      •
      MIT License
      •0•1•0•0•Updated Oct 24, 2025Oct 24, 2025

    • stan-playground

      Public
      Run Stan models in the browser
      wasmlivestanstan-playground
      TypeScript
      •
      Apache License 2.0
      •1•51•11•1•Updated Oct 24, 2025Oct 24, 2025

    • finufft

      Public
      Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3
      C++
      •
      Other
      •93•379•44•8•Updated Oct 24, 2025Oct 24, 2025

    • jax-finufft

      Public
      JAX bindings to the Flatiron Institute Non-uniform Fast Fourier Transform (FINUFFT) library
      Python
      •
      Apache License 2.0
      •7•103•9•4•Updated Oct 24, 2025Oct 24, 2025

    • figpack

      Public
      A Python package for creating shareable, interactive, browser-based visualizations
      pypilivefigpack
      TypeScript
      •
      Apache License 2.0
      •0•11•3•0•Updated Oct 24, 2025Oct 24, 2025

    • nemos

      Public
      NEural MOdelS, a statistical modeling framework for neuroscience.
      Python
      •
      MIT License
      •11•107•125•4•Updated Oct 24, 2025Oct 24, 2025

    • simple_ans

      Public
      Simple ANS (Asymmetric Numeral Systems) implementation in Python/C++
      compressionpypi
      Python
      •
      Apache License 2.0
      •4•4•0•2•Updated Oct 24, 2025Oct 24, 2025

    • sparse_dot

      Public
      Python wrapper for Intel Math Kernel Library (MKL) matrix multiplication
      pythonnumpymatrix-multiplicationsparsescipysparse-matrixmkl
      Python
      •
      MIT License
      •11•91•3•0•Updated Oct 23, 2025Oct 23, 2025

    • cephdu

      Public
      A ncdu-like TUI for the Ceph File System, using xattrs instead of crawling
      cephdisk-usagencdu
      Rust
      •
      MIT License
      •0•2•15•0•Updated Oct 22, 2025Oct 22, 2025

    • dmk

      Public
      A Dual-space Multilevel Kernel-splitting (DMK) Framework for Discrete and Continuous Convolution
      C++
      •4•14•12•1•Updated Oct 22, 2025Oct 22, 2025

    • scc-viswall-prom

      Public
      Generates plots of cluster usage data for the Flatiron viswall by scraping Prometheus
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 21, 2025Oct 21, 2025

    • neurosift

      Public
      Browser-based NWB visualization and DANDI exploration
      pypilivenwbneurosiftdandi
      TypeScript
      •
      Apache License 2.0
      •13•60•45•1•Updated Oct 21, 2025Oct 21, 2025

    • CryoLike

      Public
      Python
      •
      MIT License
      •7•11•8•7•Updated Oct 17, 2025Oct 17, 2025

    • aLENS_analysis

      Public
      Postprocessing & analysis scripts for aLENS data
      Jupyter Notebook
      •
      Other
      •2•0•0•0•Updated Oct 16, 2025Oct 16, 2025

    • fi-slurm-utils

      Public
      Command-line utilities for Slurm HPC clusters
      slurmhpc-clusters
      Rust
      •
      Apache License 2.0
      •0•5•1•0•Updated Oct 15, 2025Oct 15, 2025

    • cppdlr

      Public
      Discrete Lehmann representation of imaginary time Green's functions
      C++
      •
      Apache License 2.0
      •6•12•1•0•Updated Oct 13, 2025Oct 13, 2025

    • binderhub

      Public
      Deterministically build docker images from a git repository + commit
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •398•2•2•0•Updated Oct 10, 2025Oct 10, 2025

    • Cryo-EM-Heterogeneity-Challenge-1

      Public
      The Inaugural Flatiron Institute Cryo-EM Heterogeneity Community Challenge
      Jupyter Notebook
      •
      MIT License
      •1•10•31•5•Updated Oct 9, 2025Oct 9, 2025

    • CaImAn

      Public
      Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
      calcium-imagingmotion-correctionsource-extractiondeconvolution2-photoncnmf
      Python
      •
      GNU General Public License v2.0
      •389•695•74•13•Updated Oct 8, 2025Oct 8, 2025

    • nifty-ls

      Public
      A fast Lomb-Scargle periodogram. It's nifty, and uses a NUFFT!
      time-serieslomb-scargle-periodogramspectral-analysis
      Python
      •
      Apache License 2.0
      •5•44•4•0•Updated Oct 6, 2025Oct 6, 2025

    • disBatch

      Public
      Dynamic dispatch of a list of command-line tasks, locally or on a cluster. Supports retrying failed tasks, and adding/removing compute resources on-the-fly.
      distributed-computingbatch-processing
      Python
      •
      Apache License 2.0
      •9•46•7•0•Updated Oct 6, 2025Oct 6, 2025

    • masala_public

      Public
      The public repository for the Core library of the Masala software suite. Masala is a set of free and open-source tools for biomolecular modelling, with a plugin-based infrastructure that makes it easy to extend other software.
      C++
      •
      GNU Affero General Public License v3.0
      •1•7•0•0•Updated Oct 3, 2025Oct 3, 2025