Repositories list

• scran.js

  Public
  Single cell analysis in Javascript

  webassemblysingle-cell

  JavaScript

  •

  MIT License

  •3•21•0•0•Updated Aug 6, 2025Aug 6, 2025

• kana

  Public
  Single cell analysis in the browser

  bioinformaticsrna-seqexploratory-data-analysis+ 5webassemblyinteractive-analysissingle-cellinteractive-visualizationscite-seq

  JavaScript

  •

  MIT License

  •18•151•29•1•Updated Aug 6, 2025Aug 6, 2025

• bakana-remotes

  Public
  Remote readers for the bakana scRNA-seq analysis pipeline

  JavaScript

  •0•0•0•0•Updated Aug 6, 2025Aug 6, 2025

• bakana

  Public
  Backend compute for kana

  JavaScript

  •

  MIT License

  •0•4•1•0•Updated Aug 6, 2025Aug 6, 2025

• random-test-files

  Public
  Random files for testing web applications.

  R

  •0•0•1•0•Updated Aug 5, 2025Aug 5, 2025

• wobbegong-kana

  Public
  JavaScript

  •0•0•0•0•Updated May 30, 2025May 30, 2025

• wobbegong-R

  Public
  Generate wobbegong-formatted files for querying SummarizedExperiments

  wobbegong

  R

  •

  Other

  •0•1•0•0•Updated Jan 8, 2025Jan 8, 2025

• wobbegong-logo

  Public
  Logo for wobbegong-related code

  wobbegong

  MIT License

  •0•0•0•0•Updated Dec 5, 2024Dec 5, 2024

• wobbegong.js

  Public
  Client-side queries on SummarizedExperiments using the wobbegong format

  wobbegong

  JavaScript

  •

  MIT License

  •0•0•0•0•Updated Dec 4, 2024Dec 4, 2024

• emcmake-docker

  Public
  Docker image for Emscripten + Cmake

  Dockerfile

  •

  MIT License

  •0•0•0•0•Updated Oct 2, 2024Oct 2, 2024

• igraph-wasm

  Public
  Compiled Wasm binaries for the igraph C library

  CMake

  •0•4•0•0•Updated Oct 1, 2024Oct 1, 2024

• bakana-takane

  Public
  bakana extensions for takane-formatted datasets

  JavaScript

  •

  MIT License

  •0•0•0•0•Updated May 2, 2024May 2, 2024

• scran.js-docker

  Public
  Docker image for building scran.js

  Dockerfile

  •

  MIT License

  •0•0•0•0•Updated May 1, 2024May 1, 2024

• kana-paper

  Public
  Manuscript for kana

  TeX

  •0•1•0•0•Updated Jan 22, 2024Jan 22, 2024

• .github

  Public
  R

  •0•0•0•0•Updated Aug 11, 2023Aug 11, 2023

• libhdf5-wasm

  Public
  Build HDF5 in WebAssembly

  CMake

  •

  Other

  •6•0•0•0•Updated Jul 17, 2023Jul 17, 2023

• singlepp-references

  Public
  Reference datasets to use with the singlepp algorithm

  R

  •0•1•0•0•Updated Apr 29, 2023Apr 29, 2023

• kanaverse.github.io

  Public
  0•0•0•0•Updated Apr 14, 2023Apr 14, 2023

• kana-v3-dev

  Public archive
  JavaScript

  •0•0•0•0•Updated Apr 11, 2023Apr 11, 2023

• kana-special-features

  Public
  Lists of special features for use in kana.

  R

  •

  MIT License

  •0•0•0•0•Updated Feb 23, 2023Feb 23, 2023

• kana-feature-sets

  Public
  Prebuilt feature sets for use in kana's GSEA

  R

  •

  MIT License

  •0•0•0•0•Updated Feb 23, 2023Feb 23, 2023

• kana-formats

  Public
  Format descriptions for kana's exported state.

  JavaScript

  •0•0•0•0•Updated Jan 1, 2023Jan 1, 2023

• valkana

  Public
  Validating the kana state files

  JavaScript

  •0•0•0•0•Updated Jan 1, 2023Jan 1, 2023

• kanaval

  Public
  Specification-as-code validator for the kana format.

  C++

  •

  MIT License

  •0•0•1•0•Updated Dec 31, 2022Dec 31, 2022

• kanapi

  Public
  API layer to analyze single cell RNA-seq analysis in node

  kana

  JavaScript

  •0•1•1•0•Updated Jun 30, 2022Jun 30, 2022

• kana.perf

  Public
  JavaScript

  •0•0•0•1•Updated Feb 1, 2022Feb 1, 2022