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    21 repositories

    • rdeval

      Public
      Multithreaded read analysis
      C++
      •
      MIT License
      •2•19•1•0•Updated Oct 23, 2025Oct 23, 2025

    • kcount

      Public
      A kmer counting tool
      C++
      •
      MIT License
      •0•1•0•0•Updated Oct 20, 2025Oct 20, 2025

    • gfalibs

      Public
      general purpose library for sequence manipulation
      C++
      •
      MIT License
      •3•1•0•0•Updated Oct 20, 2025Oct 20, 2025

    • teloscope

      Public
      A comprehensive telomere annotation tool for genome assemblies and graphs.
      bioinformaticsgenomerepeatspatternpacbiogenome-annotationaginggenome-analysisgenome-assemblysequence-analysis
      C++
      •
      MIT License
      •0•11•0•0•Updated Aug 14, 2025Aug 14, 2025

    • gfastats

      Public
      A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulation.
      C++
      •
      MIT License
      •11•114•2•0•Updated Jun 3, 2025Jun 3, 2025

    • data-wrangling

      Public
      VGL data wrangling
      Python
      •0•0•0•0•Updated May 21, 2025May 21, 2025

    • rdeval-manuscript

      Public
      Scripts used for the rdeval manuscript
      Python
      •
      MIT License
      •0•0•0•0•Updated May 19, 2025May 19, 2025

    • rdeval-documentation

      Public
      Read The Docs documentation for rdeval
      0•0•0•0•Updated May 5, 2025May 5, 2025

    • gfalign

      Public
      Assembly graph read alignment and analysis
      C++
      •
      MIT License
      •2•1•0•0•Updated May 2, 2025May 2, 2025

    • teloscope-manuscript

      Public
      Scripts used for the rdeval manuscript
      MIT License
      •0•0•0•0•Updated Feb 13, 2025Feb 13, 2025

    • vgl-curation

      Public
      VGL curation pipeline
      Python
      •8•0•0•1•Updated Sep 17, 2024Sep 17, 2024

    • app_template

      Public
      a template for gfastar tools
      C++
      •
      MIT License
      •2•0•0•0•Updated Aug 7, 2024Aug 7, 2024

    • kreeq

      Public
      Kmer-based consensus accuracy tool
      C++
      •
      MIT License
      •1•0•0•0•Updated Aug 7, 2024Aug 7, 2024

    • randseq

      Public
      A tool to generate random reference and matched read sequences
      C++
      •
      MIT License
      •2•0•0•0•Updated Jun 8, 2024Jun 8, 2024

    • ismtools

      Public
      a toolsuite for in silico genome maps
      C++
      •
      MIT License
      •0•0•0•0•Updated May 29, 2024May 29, 2024

    • pipelines

      Public
      1•0•0•0•Updated May 22, 2023May 22, 2023

    • gfastar

      Public
      A tool suite for genome assembly evaluation and manipulation
      C++
      •
      MIT License
      •0•5•0•0•Updated Aug 5, 2022Aug 5, 2022

    • vgl-ssds

      Public
      Simple data storage system for GenomeArk AWS S3 bucket
      Python
      •
      MIT License
      •2•0•0•0•Updated Jun 30, 2022Jun 30, 2022

    • MultiQC

      Public
      Aggregate results from bioinformatics analyses across many samples into a single report.
      HTML
      •
      GNU General Public License v3.0
      •638•0•0•0•Updated Feb 25, 2022Feb 25, 2022

    • genome-portal

      Public
      HTML
      •0•0•0•0•Updated Feb 16, 2022Feb 16, 2022

    • gnome_seeker

      Public
      Python
      •0•1•0•0•Updated Feb 10, 2022Feb 10, 2022