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Merged
merged 8 commits into from
May 9, 2025
Merged

add portuguese tutorial to toc #58

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72b69b9
correct tutorial figures
emiglietta May 5, 2025
62efec2
edit figure insertion and create quick SPANISH translation
emiglietta May 5, 2025
52db4c1
add spanish tutorial to toc file
emiglietta May 5, 2025
cfda2d4
Update _toc.yml
emiglietta May 5, 2025
966222b
Update _toc.yml
emiglietta May 5, 2025
45a910a
edit figure numbers and titles
emiglietta May 5, 2025
93ff3e1
Update _toc.yml
emiglietta May 9, 2025
527c666
Merge branch 'main' into updated_tutorial
emiglietta May 9, 2025
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1 change: 1 addition & 0 deletions piximi-documentation/_toc.yml
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Expand Up @@ -12,6 +12,7 @@ parts:
chapters:
- file: translocation_tutorial
- file: translocation_tutorial_ES
- file: translations/pt_BR/translocation_tutorial
- file: classify-example-eukaryotic-image
- file: classify-example-eukaryotic-object
- caption: How-to Guides
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2 changes: 0 additions & 2 deletions piximi-documentation/translocation_tutorial.md
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Expand Up @@ -14,7 +14,6 @@ Piximi is a modern, no-programming image analysis tool leveraging deep learning.

Piximi is interoperable with existing tools and workflows by supporting import and export of common data and model formats. The intuitive interface and easy access to Piximi allows biological researchers to obtain insights into images within just a few minutes. Piximi aims to bring deep learning-powered image analysis to a broader community by eliminating barriers to entry.


\* except for the segmentations using Cellpose, which are sent to a remote server (with the permission of the user).

Core functionalities: **Annotator, Segmentor, Classifier, Measurments.**
Expand All @@ -29,7 +28,6 @@ In this exercise, you will familiarize yourself with Piximi’s main functionali
In this experiment, researchers imaged fixed U2OS osteosarcoma (bone cancer) cells expressing a FOXO1A-GFP fusion protein and stained DAPI to label the nuclei. FOXO1 is a transcription factor that plays a key role in regulating gluconeogenesis and glycogenolysis through insulin signaling. FOXO1A dynamically shuttles between the cytoplasm and nucleus in response to various stimuli. Wortmannin, a PI3K inhibitor, can block nuclear export, resulting in the accumulation of FOXO1A in the nucleus.



```{figure} ./img/tutorial_images/Figure1.png
:width: 300
:align: center
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1 change: 1 addition & 0 deletions piximi-documentation/translocation_tutorial_ES.md
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Expand Up @@ -49,6 +49,7 @@ Lea los pasos que se indican a continuación y siga las instrucciones donde se i

* Cargar el proyecto de ejemplo: Haga clic en «Abrir» \- “Proyecto” \- «Proyecto desde Zip», como se muestra en la figura 32 para cargar un archivo de proyecto para este tutorial desde Zip, y opcionalmente puede cambiar el nombre del proyecto en el panel superior izquierdo, como «Ejercicio Piximi». A medida que se carga, se puede ver la progresión en la esquina superior izquierda logotipo <img src="./img/tutorial_images/Piximi_logo.png" width="80">.


```{figure} ./img/tutorial_images/Figure2.png
:width: 600
:align: center
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