sq.pp.filter_cells for SpatialData

[selmanozleyen]

Fixes #1007.

Hi @timtreis ,

I changed some things compared to your PR: #967 . The things I changed:

• No error checks for min_counts, min_genes, max_counts, max_genes since all of them can be handled by the call of sc.filter_cells
• refactored the logic and removed duplicate code

The code from what I understand should be in the following logic.

• Let the sc.filter_cells filter the tables and update others based on that. If there is no actual filtering I think it would be best because we would assure same behavior with sc.filter_cells

What needs to be done:

• write tests

Tests fails because scverse/spatialdata#946 needs to be merged first

[codecov-commenter]

Codecov Report

Attention: Patch coverage is 75.26882% with 23 lines in your changes missing coverage. Please review.

Project coverage is 66.80%. Comparing base (d8b8f91) to head (c9e48f9).
Report is 3 commits behind head on main.

Files with missing lines	Patch %	Lines
src/squidpy/pp/_simple.py	75.26%	11 Missing and 12 partials ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #1011      +/-   ##
==========================================
+ Coverage   66.63%   66.80%   +0.16%     
==========================================
  Files          40       41       +1     
  Lines        6060     6160     +100     
  Branches     1015     1036      +21     
==========================================
+ Hits         4038     4115      +77     
- Misses       1662     1673      +11     
- Partials      360      372      +12     

Files with missing lines	Coverage Δ
src/squidpy/pp/_simple.py	75.26% <75.26%> (ø)

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