Feature release

Improvements:

• Support filtering by FILTER (#217), CHROM (#223) and general string values (#220)
• Support regions (-r/-t), filter expressions (-i/-e) and samples (-s) in query command (#205)
• Various improvements to support VCZ datasets produced from tskit and plink files by bio2zarr.
• Use a fully dynamically generated header via vcf_meta_information attributes (#208). Requires vcf-zarr version >= 0.4 (bio2zarr >= 0.1.6) to fully recover the original header.
• Add --version (#197)

Breaking:

Update minimum Click version to 8.2.0 (#206)

Recommended bugfix release

Important bugfixes for filtering language and sample subsetting.

All users are recommended to upgrade ASAP.

Filtering mini-language

Clarify the implementation status of the filtering mini-lanuage in view/query. Version 0.0.1 contained several data-corrupting bugs, including incorrect missing data handling (#163), incorrect matching on FILTER (#164) and CHROM (#178) columns, and incorrect per-sample filtering in query (#179). These issues have been resolved by raising informative errors on aspects of the query language that are not implemented correctly.

The filtering mini-language now consists of arbitrary arithmetic expressions on 1-dimensional fields.

Sample subsetting

Add support for specifying samples via -s/-S options

Initial release

0.0.1

0.0.1

0.0.1a3

Alpha pre-release for testing

Alpha pre-release for testing

Early pre-release for testing.